Escherichia coli CUVET20-PYO4 |
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Putative Escherichia coli CUVET20-PYO4 RM systems
Ref: Sroithongkham,P. et al. unpublished
REBASE ref # 37451
| Sequence length: | GenBank #: | |
| Chromosome: | 5,199,531 bp | CP115376 |
| plasmid pCUVET20-PYO4.1: | 127,633 bp | CP115377 |
| plasmid pCUVET20-PYO4.3: | 89,033 bp | CP115379 |
REBASE acronym: EcoO4
Org_num: 71401
All begin PCS82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5620 | SprT family zinc-dependent metalloprotease | |||
| 5625 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoO4ORF5645P |
| 5630 | cold shock domain-containing protein | |||
| 5635 | YecA family protein | |||
| 5640 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoO4ORF5645P |
| 5645 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoO4ORF5645P |
| 5650 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2140 | TrmB family transcriptional regulator | |||
| 2145 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoO4ORF2145P |
| 2160 | DUF3927 family protein | |||
| 5905 | drug/metabolite exporter YedA | |||
| 5910 | V | V.Ecos142DcmP (100% identity) | V.EcoO4DcmP | |
| 5915 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoO4DcmP |
| 5920 | phosphohydrolase | |||
| 13165 | DNA-binding transcriptional regulator Fis | |||
| 13170 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.EcoO4ORF13170P |
| 13175 | DUF2556 family protein | |||
| 13695 | ribulose-phosphate 3-epimerase | |||
| 13700 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoO4DamP |
| 13705 | cell division protein DamX | |||
| 18505 | integrase | |||
| 18510 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoO4ORF18510P |
| 18515 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoO4ORF18510P |
| 18520 | 100 aa hypothetical protein | |||
| 19660 | 100 aa hypothetical protein | |||
| 19665 | R | SflN116ORF19475P (100% identity) | EcoO4ORF19665P | |
| 19670 | HNH endonuclease | |||
| 24600 | TraR/DksA family transcriptional regulator | |||
| 24605 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoO4ORF24605P |
| 24610 | replication endonuclease | |||
| plasmid pCUVET20-PYO4.1 | ||||
| 25760 | 73 aa hypothetical protein | |||
| 25765 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoO4ORF25765P |
| 25770 | 103 aa hypothetical protein | |||
| plasmid pCUVET20-PYO4.3 | ||||
| 26925 | 206 aa hypothetical protein | |||
| 26930 | M | M.EcoS081ORF47400P (90% identity) | M.EcoO4ORF26930P | |
| 26935 | 94 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19640 | SNF2-related protein | |||
| 19645 | M | M.SflN116ORF19490P (99% identity) | GAACC | M.EcoO4ORF19645P |
| 19650 | R | SflN116ORF19490P (62% identity) | GAACC | EcoO4ORF19645AP |
| 19655 | R | SflN116ORF19490P (30% identity) | GAACC | EcoO4ORF19645BP |
| 19660 | 100 aa hypothetical protein | |||