Escherichia coli CUVET16-394 |
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Putative Escherichia coli CUVET16-394 RM systems
Ref: Sroithongkham,P. et al. unpublished
REBASE ref # 37451
| Sequence length: | GenBank #: | |
| Chromosome: | 5,101,217 bp | CP115330 |
| plasmid pCUVET16-394.1: | 157,054 bp | CP115331 |
REBASE acronym: Eco6394
Org_num: 71388
All begin PCS96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12185 | DUF262 domain-containing HNH endonuclease family | |||
| 12190 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | Eco6394ORF12195P |
| 12195 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco6394ORF12195P |
| 12200 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.Eco6394ORF12195P |
| 12205 | endoribonuclease SymE | |||
| 12425 | DUF4942 domain-containing protein | |||
| 12430 | M | M.EcoZ151ORF20915P (100% identity) | GARANNNNNNNTGG | M.Eco6394ORF12430P |
| 12435 | S | S.EcoI605ORF22375P (100% identity) | GARANNNNNNNTGG | S.Eco6394ORF12430P |
| 12440 | R | EcoZ151ORF20915P (99% identity) | GARANNNNNNNTGG | Eco6394ORF12430P |
| 12450 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid pCUVET16-394.1 | ||||
| 25260 | IS1-like element IS1B family transposase | |||
| 25265 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco6394ORF25275P |
| 25270 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.Eco6394ORF25275P |
| 25275 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco6394ORF25275P |
| 25280 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1170 | phosphohydrolase | |||
| 1175 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco6394DcmP |
| 1180 | V | V.EcosE1DcmP (74% identity) | V.Eco6394DcmP | |
| 1185 | drug/metabolite exporter YedA | |||
| 12405 | HNH endonuclease | |||
| 12410 | R | EcoZ151ORF20895P (100% identity) | Eco6394ORF12410P | |
| 12415 | McrC family protein | |||
| 13175 | integrase | |||
| 13180 | R | SflFF24DptFP (100% identity) | Eco6394DptFP | |
| 13185 | DNA phosphorothioation-dependent restriction | |||
| 13180 | DNA phosphorothioation-dependent restriction | |||
| 13185 | R | SflFF24DptGP (100% identity) | Eco6394DptGP | |
| 13190 | DNA phosphorothioation-dependent restriction | |||
| 13185 | DNA phosphorothioation-dependent restriction | |||
| 13190 | R | EcosEC5DptHP (100% identity) | Eco6394DptHP | |
| 13195 | accessory gene regulator B family protein | |||
| 13205 | DGQHR domain-containing protein | |||
| 13210 | M | M.SflFF24DndEP (100% identity) | M.Eco6394DndEP | |
| 13215 | DNA sulfur modification protein DndD | |||
| 13210 | DNA sulfur modification protein DndE | |||
| 13215 | M | M.SflFF24DndDP (100% identity) | M.Eco6394DndDP | |
| 13220 | DNA phosphorothioation system sulfurtransferase | |||
| 13215 | DNA sulfur modification protein DndD | |||
| 13220 | M | M.SflFF24DndCP (100% identity) | M.Eco6394DndCP | |
| 13225 | DNA sulfur modification protein DndB | |||
| 13220 | DNA phosphorothioation system sulfurtransferase | |||
| 13225 | M | M.SflFF24DndBP (100% identity) | M.Eco6394DndBP | |
| 13230 | osmoprotectant transport activator ProQ | |||
| 17510 | cell division protein DamX | |||
| 17515 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco6394DamP |
| 17520 | ribulose-phosphate 3-epimerase | |||
| 18045 | DUF2556 family protein | |||
| 18050 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco6394ORF18050P |
| 18055 | DNA-binding transcriptional regulator Fis | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12205 | endoribonuclease SymE | |||
| 12210 | R | EcoP666GmrSDP (100% identity) | Eco6394GmrSDP | |
| 12215 | R | SflLIN8GmrSDP (42% identity) | Eco6394GmrSP | |
| 12220 | 15 aa hypothetical protein | |||
| 12410 | HNH endonuclease | |||
| 12415 | R | EcoZ151McrCP (100% identity) | Eco6394McrCP | |
| 12420 | R | EcoZ151McrBP (100% identity) | Eco6394McrBP | |
| 12425 | DUF4942 domain-containing protein | |||