Escherichia coli SIJ488 |
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Putative Escherichia coli SIJ488 RM systems
Ref: Jensen,S.I. et al. Sci Rep 5, 17874 (2015)
REBASE ref # 37379
Complete sequence: 4,648,169 bp
GenBank #: CP132594
REBASE acronym: Eco488
Org_num: 71152
All begin Q9H07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22395 | endoribonuclease SymE | |||
| 22400 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco488ORF22405P |
| 22405 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco488ORF22405P |
| 22410 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco488ORF22405P |
| 22415 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10155 | drug/metabolite exporter YedA | |||
| 10160 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco488DcmP |
| 10165 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco488DcmP |
| 10170 | phosphohydrolase | |||
| 16745 | DNA-binding transcriptional regulator Fis | |||
| 16750 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco488ORF16750P |
| 16755 | DUF2556 family protein | |||
| 17370 | ribulose-phosphate 3-epimerase | |||
| 17375 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco488DamP |
| 17380 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22380 | 978 aa hypothetical protein | |||
| 22385 | R | SenHNK130McrCP (100% identity) | Eco488McrCP | |
| 22390 | R | SenHNK130McrBP (100% identity) | Eco488McrBP | |
| 22395 | endoribonuclease SymE | |||
| 22410 | type I restriction-modification system | |||
| 22415 | R | SenHNK130MrrP (100% identity) | Eco488MrrP | |
| 22420 | GTPase | |||