Escherichia coli R8 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli R8 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,096,686 bp | CP107172 |
| plasmid pR8-318: | 149,268 bp | CP107173 |
REBASE acronym: EcosR8
Org_num: 69869
All begin OGM37_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2815 | endoribonuclease SymE | |||
| 2820 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.EcosR8ORF2825P |
| 2825 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.EcosR8ORF2825P |
| 2830 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | EcosR8ORF2825P |
| 2835 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | replication endonuclease | |||
| 15 | M | M.SflFF38ORF15P (100% identity) | GGCC | M.EcosR8ORF15P |
| 20 | 330 aa hypothetical protein | |||
| 7930 | 134 aa hypothetical protein | |||
| 7935 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR8ORF7935P | |
| 7940 | helix-turn-helix domain-containing protein | |||
| 10175 | TrmB family transcriptional regulator | |||
| 10180 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR8ORF10180P |
| 10195 | DUF3927 family protein | |||
| 13170 | 39 aa hypothetical protein | |||
| 13190 | M | M.EcoST131bORFJP (100% identity) | A | M.EcosR8ORF13190P |
| 13195 | TrmB family transcriptional regulator | |||
| 13195 | TrmB family transcriptional regulator | |||
| 13200 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcosR8ORF13210P |
| 13205 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcosR8ORF13210P |
| 13210 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcosR8ORF13210P |
| 13215 | antiterminator Q family protein | |||
| 14090 | drug/metabolite exporter YedA | |||
| 14095 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR8DcmP |
| 14100 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR8DcmP |
| 14105 | phosphohydrolase | |||
| 21500 | DNA-binding transcriptional regulator Fis | |||
| 21505 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR8ORF21505P |
| 21510 | DUF2556 family protein | |||
| 22100 | ribulose-phosphate 3-epimerase | |||
| 22105 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR8DamP |
| 22110 | cell division protein DamX | |||
| plasmid pR8-318 | ||||
| 25770 | 73 aa hypothetical protein | |||
| 25775 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcosR8ORF25775P |
| 25780 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2495 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2500 | R | EcosS9McrCP (100% identity) | EcosR8McrCP | |
| 2505 | R | EcosS3McrBP (100% identity) | EcosR8McrBP | |
| 2510 | glycosyltransferase | |||
| 2800 | DUF1127 domain-containing protein | |||
| 2805 | R | Eco623214GmrDAP (100% identity) | EcosR8GmrDP | |
| 2810 | DUF1524 domain-containing protein | |||