Escherichia coli R4 |
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Putative Escherichia coli R4 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,325,420 bp | CP107182 |
| plasmid pR4-B86605: | 118,803 bp | CP107183 |
REBASE acronym: EcosR4
Org_num: 69866
All begin OGM34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3435 | endoribonuclease SymE | |||
| 3440 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR4ORF3450P |
| 3445 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR4ORF3450P |
| 3450 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR4ORF3450P |
| 3455 | restriction endonuclease | |||
| 5260 | ash family protein | |||
| 5265 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR4ORF5270P |
| 5270 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosR4ORF5270P |
| 5275 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR4ORF5270P |
| 5280 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3090 | helix-turn-helix domain-containing protein | |||
| 3095 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR4ORF3095P |
| 3100 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR4ORF3095P |
| 3105 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR4ORF3095P |
| 3110 | McrC family protein | |||
| 8770 | 71 aa hypothetical protein | |||
| 8775 | M | M.Sen21974ORF23385P (100% identity) | M.EcosR4ORF8775P | |
| 8780 | 139 aa hypothetical protein | |||
| 9980 | phosphohydrolase | |||
| 9985 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR4DcmP |
| 9990 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR4DcmP |
| 9995 | drug/metabolite exporter YedA | |||
| 10865 | antiterminator Q family protein | |||
| 10870 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M1.EcosR4ORF10870P |
| 10875 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcosR4ORF10870P |
| 10880 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcosR4ORF10870P |
| 10885 | TrmB family transcriptional regulator | |||
| 10890 | M | M1.EcosS3ORF2905P (100% identity) | M2.EcosR4ORF10870P | |
| 10895 | sialate O-acetylesterase | |||
| 13865 | DUF3927 family protein | |||
| 13880 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR4ORF13880P |
| 13885 | TrmB family transcriptional regulator | |||
| 16135 | helix-turn-helix domain-containing protein | |||
| 16140 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR4ORF16140P | |
| 16145 | 71 aa hypothetical protein | |||
| 16645 | DUF1804 family protein | |||
| 16650 | M | M.EspP049ORF3912P (100% identity) | M.EcosR4ORF16650P | |
| 16655 | phage terminase large subunit | |||
| 18950 | 121 aa hypothetical protein | |||
| 18955 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR4ORF18960P |
| 18960 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR4ORF18960P |
| 18965 | 257 aa hypothetical protein | |||
| 19090 | phage lysis protein EssD | |||
| 19095 | M | M.EcosR6ORF7985P (100% identity) | M.EcosR4ORF19095P | |
| 19100 | 95 aa hypothetical protein | |||
| 19135 | LexA family transcriptional regulator | |||
| 19140 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR4ORF19140P |
| 19145 | PerC family transcriptional regulator | |||
| 22920 | DNA-binding transcriptional regulator Fis | |||
| 22925 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR4ORF22925P |
| 22930 | DUF2556 family protein | |||
| 23520 | ribulose-phosphate 3-epimerase | |||
| 23525 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR4DamP |
| 23530 | cell division protein DamX | |||
| plasmid pR4-B86605 | ||||
| 26880 | 103 aa hypothetical protein | |||
| 26885 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR4ORF26885P | |
| 26890 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3105 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3110 | R | EcosS9McrCP (100% identity) | EcosR4McrCP | |
| 3115 | R | EcosS3McrBP (100% identity) | EcosR4McrBP | |
| 3120 | glycosyltransferase | |||
| 3450 | type I restriction-modification system subunit | |||
| 3455 | R | Ecou021MrrP (100% identity) | EcosR4MrrP | |
| 3460 | BrnT family toxin | |||