Escherichia coli R3 |
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Putative Escherichia coli R3 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,283,900 bp | CP107184 |
| plasmid pR3-1063-1: | 134,093 bp | CP107185 |
| plasmid pR3-1063-2: | 89,917 bp | CP107186 |
REBASE acronym: EcosR3
Org_num: 69865
All begin OGM33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19620 | type IV toxin-antitoxin system AbiEi family | |||
| 19625 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR3ORF19630P |
| 19630 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosR3ORF19630P |
| 19635 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR3ORF19630P |
| 19640 | ash family protein | |||
| 21710 | restriction endonuclease | |||
| 21715 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR3ORF21715P |
| 21720 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR3ORF21715P |
| 21725 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR3ORF21715P |
| 21730 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1700 | cell division protein DamX | |||
| 1705 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR3DamP |
| 1710 | ribulose-phosphate 3-epimerase | |||
| 2300 | DUF2556 family protein | |||
| 2305 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR3ORF2305P |
| 2310 | DNA-binding transcriptional regulator Fis | |||
| 6085 | PerC family transcriptional regulator | |||
| 6090 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR3ORF6090P |
| 6095 | LexA family transcriptional regulator | |||
| 6130 | 95 aa hypothetical protein | |||
| 6135 | M | M.EcosR6ORF7985P (100% identity) | M.EcosR3ORF6135P | |
| 6140 | phage lysis protein EssD | |||
| 6265 | 257 aa hypothetical protein | |||
| 6270 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR3ORF6270P |
| 6275 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR3ORF6270P |
| 6280 | 121 aa hypothetical protein | |||
| 10060 | phosphohydrolase | |||
| 10065 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR3DcmP |
| 10070 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR3DcmP |
| 10075 | drug/metabolite exporter YedA | |||
| 10945 | antiterminator Q family protein | |||
| 10950 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M1.EcosR3ORF10950P |
| 10955 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcosR3ORF10950P |
| 10960 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcosR3ORF10950P |
| 10965 | TrmB family transcriptional regulator | |||
| 10970 | M | M1.EcosS3ORF2905P (100% identity) | M2.EcosR3ORF10950P | |
| 10975 | sialate O-acetylesterase | |||
| 13925 | sialate O-acetylesterase | |||
| 13930 | M | M1.EcosS3ORF2905P (100% identity) | M.EcosR3ORF13930P | |
| 13935 | TrmB family transcriptional regulator | |||
| 16140 | helix-turn-helix domain-containing protein | |||
| 16145 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR3ORF16145P | |
| 16150 | 71 aa hypothetical protein | |||
| 22065 | McrC family protein | |||
| 22070 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR3ORF22075P |
| 22075 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR3ORF22075P |
| 22080 | M | M1.EcosS9ORF2810P (99% identity) | GGTCTC | M2.EcosR3ORF22075P |
| 22085 | helix-turn-helix domain-containing protein | |||
| plasmid pR3-1063-1 | ||||
| 26910 | 73 aa hypothetical protein | |||
| 26915 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR3ORF26915P | |
| 26920 | 103 aa hypothetical protein | |||
| plasmid pR3-1063-2 | ||||
| 27090 | 104 aa hypothetical protein | |||
| 27095 | M | M.Sen4346ORF22715P (100% identity) | M.EcosR3ORF27095P | |
| 27100 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21705 | BrnT family toxin | |||
| 21710 | R | Ecou021MrrP (100% identity) | EcosR3MrrP | |
| 21715 | type I restriction-modification system subunit | |||
| 22045 | glycosyltransferase | |||
| 22050 | R | EcosS3McrBP (90% identity) | EcosR3McrBP | |
| 22055 | IS3-like element ISEc52 family transposase | |||
| 22060 | DUF2079 domain-containing protein | |||
| 22065 | R | EcosS9McrCP (100% identity) | EcosR3McrCP | |
| 22070 | Alw26I/Eco31I/Esp3I family type II restriction | |||