Escherichia coli R2 |
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Putative Escherichia coli R2 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,095,314 bp | CP107188 |
| plasmid pR2-1030-1: | 162,472 bp | CP107189 |
REBASE acronym: Eco2
Org_num: 69864
All begin OGM32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11825 | TniQ family protein | |||
| 11830 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.Eco2ORF11830P |
| 11835 | AAA family ATPase | |||
| 11840 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Eco2ORF11830P |
| 11845 | DNA binding domain-containing protein | |||
| 11850 | histidinol-phosphatase | |||
| 11855 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | Eco2ORF11830P |
| 11860 | helix-turn-helix domain-containing protein | |||
| 17200 | endoribonuclease SymE | |||
| 17205 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco2ORF17215P |
| 17210 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco2ORF17215P |
| 17215 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco2ORF17215P |
| 17220 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3460 | drug/metabolite exporter YedA | |||
| 3465 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco2DcmP |
| 3470 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco2DcmP |
| 3475 | phosphohydrolase | |||
| 10675 | DNA-binding transcriptional regulator Fis | |||
| 10680 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco2ORF10680P |
| 10685 | DUF2556 family protein | |||
| 11275 | ribulose-phosphate 3-epimerase | |||
| 11280 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco2DamP |
| 11285 | cell division protein DamX | |||
| 16855 | helix-turn-helix domain-containing protein | |||
| 16860 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco2ORF16860P |
| 16865 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco2ORF16860P |
| 16870 | R | EcosS9ORF2810P (99% identity) | GGTCTC | Eco2ORF16860P |
| 16875 | McrC family protein | |||
| 22510 | 71 aa hypothetical protein | |||
| 22515 | M | M.KpnYN1ORFGP (89% identity) | M.Eco2ORF22515P | |
| 22520 | helix-turn-helix domain-containing protein | |||
| 24760 | TrmB family transcriptional regulator | |||
| 24765 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco2ORF24765P |
| 24780 | DUF3927 family protein | |||
| plasmid pR2-1030-1 | ||||
| 25700 | 73 aa hypothetical protein | |||
| 25705 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco2ORF25705P |
| 25710 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16870 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16875 | R | EcosS9McrCP (100% identity) | Eco2McrCP | |
| 16880 | R | EcosS3McrBP (100% identity) | Eco2McrBP | |
| 16885 | glycosyltransferase | |||
| 17215 | type I restriction-modification system subunit | |||
| 17220 | R | Ecou021MrrP (100% identity) | Eco2MrrP | |
| 17225 | BrnT family toxin | |||