Escherichia coli S14 |
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Putative Escherichia coli S14 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,259,570 bp | CP107114 |
| plasmid pS14-1129-1: | 119,061 bp | CP107115 |
| plasmid pS14-1129-2: | 61,312 bp | CP107116 |
REBASE acronym: EcoS14
Org_num: 69873
All begin OGM54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12835 | DUF262 domain-containing HNH endonuclease family | |||
| 12840 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | EcoS14ORF12845P |
| 12845 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.EcoS14ORF12845P |
| 12850 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.EcoS14ORF12845P |
| 12855 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1380 | phosphohydrolase | |||
| 1385 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS14DcmP |
| 1390 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS14DcmP |
| 1395 | drug/metabolite exporter YedA | |||
| 2255 | antiterminator Q family protein | |||
| 2260 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoS14ORF2260P |
| 2265 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS14ORF2260P |
| 2270 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS14ORF2260P |
| 2275 | TrmB family transcriptional regulator | |||
| 2275 | TrmB family transcriptional regulator | |||
| 2280 | M | M.SflJ17BORF23540P (100% identity) | A | M.EcoS14ORF2280P |
| 2300 | 50 aa hypothetical protein | |||
| 5260 | DUF3927 family protein | |||
| 5275 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS14ORF5275P |
| 5280 | TrmB family transcriptional regulator | |||
| 7530 | helix-turn-helix domain-containing protein | |||
| 7535 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS14ORF7535P | |
| 7540 | 71 aa hypothetical protein | |||
| 13175 | McrC family protein | |||
| 13180 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS14ORF13185P |
| 13185 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS14ORF13185P |
| 13190 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS14ORF13185P |
| 13195 | helix-turn-helix domain-containing protein | |||
| 18870 | helix-turn-helix domain-containing protein | |||
| 18875 | M | M.KaeCRE8ORF15605P (99% identity) | M.EcoS14ORF18875P | |
| 18880 | 71 aa hypothetical protein | |||
| 19150 | cell division protein DamX | |||
| 19155 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS14DamP |
| 19160 | ribulose-phosphate 3-epimerase | |||
| 19750 | DUF2556 family protein | |||
| 19755 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS14ORF19755P |
| 19760 | DNA-binding transcriptional regulator Fis | |||
| plasmid pS14-1129-1 | ||||
| 26650 | 73 aa hypothetical protein | |||
| 26655 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoS14ORF26655P |
| 26660 | 103 aa hypothetical protein | |||
| plasmid pS14-1129-2 | ||||
| 26805 | 103 aa hypothetical protein | |||
| 26810 | M | M.Sfl2142ORF380P (100% identity) | M.EcoS14ORF26810P | |
| 26815 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13165 | IS3-like element ISEc52 family transposase | |||
| 13170 | R | EcosS3McrBP (100% identity) | EcoS14McrBP | |
| 13175 | R | EcosS9McrCP (100% identity) | EcoS14McrCP | |
| 13180 | Alw26I/Eco31I/Esp3I family type II restriction | |||