Escherichia coli S13 |
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Putative Escherichia coli S13 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,287,038 bp | CP107117 |
| plasmid pS13-S6K44-1: | 108,327 bp | CP107118 |
REBASE acronym: EcoS13
Org_num: 69872
All begin OGM53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3425 | endoribonuclease SymE | |||
| 3430 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS13ORF3440P |
| 3435 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS13ORF3440P |
| 3440 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS13ORF3440P |
| 3445 | restriction endonuclease | |||
| 5250 | ash family protein | |||
| 5255 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS13ORF5260P |
| 5260 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS13ORF5260P |
| 5265 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS13ORF5260P |
| 5270 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3080 | helix-turn-helix domain-containing protein | |||
| 3085 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS13ORF3085P |
| 3090 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS13ORF3085P |
| 3095 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS13ORF3085P |
| 3100 | McrC family protein | |||
| 8740 | 71 aa hypothetical protein | |||
| 8745 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS13ORF8745P | |
| 8750 | helix-turn-helix domain-containing protein | |||
| 11000 | TrmB family transcriptional regulator | |||
| 11005 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS13ORF11005P |
| 11020 | DUF3927 family protein | |||
| 13995 | sialate O-acetylesterase | |||
| 14000 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcoS13ORF14000P | |
| 14005 | TrmB family transcriptional regulator | |||
| 14010 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS13ORF14000P |
| 14015 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS13ORF14000P |
| 14020 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcoS13ORF14000P |
| 14025 | antiterminator Q family protein | |||
| 14895 | drug/metabolite exporter YedA | |||
| 14900 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS13DcmP |
| 14905 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS13DcmP |
| 14910 | phosphohydrolase | |||
| 16015 | DUF1804 family protein | |||
| 16020 | M | M.EspP049ORF3912P (100% identity) | M.EcoS13ORF16020P | |
| 16025 | phage terminase large subunit | |||
| 18310 | 121 aa hypothetical protein | |||
| 18315 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoS13ORF18320P |
| 18320 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS13ORF18320P |
| 18325 | 257 aa hypothetical protein | |||
| 18450 | phage lysis protein EssD | |||
| 18455 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS13ORF18455P | |
| 18460 | 95 aa hypothetical protein | |||
| 18495 | LexA family transcriptional regulator | |||
| 18500 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS13ORF18500P |
| 18505 | PerC family transcriptional regulator | |||
| 22660 | DNA-binding transcriptional regulator Fis | |||
| 22665 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS13ORF22665P |
| 22670 | DUF2556 family protein | |||
| 23260 | ribulose-phosphate 3-epimerase | |||
| 23265 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS13DamP |
| 23270 | cell division protein DamX | |||
| plasmid pS13-S6K44-1 | ||||
| 26735 | 73 aa hypothetical protein | |||
| 26740 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS13ORF26740P | |
| 26745 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3095 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3100 | R | EcosS9McrCP (100% identity) | EcoS13McrCP | |
| 3105 | R | EcosS3McrBP (100% identity) | EcoS13McrBP | |
| 3110 | glycosyltransferase | |||
| 3440 | type I restriction-modification system subunit | |||
| 3445 | R | Ecou021MrrP (100% identity) | EcoS13MrrP | |
| 3450 | BrnT family toxin | |||