Escherichia coli S12 |
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Putative Escherichia coli S12 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,281,079 bp | CP107120 |
| plasmid pS12-1027: | 150,851 bp | CP107121 |
REBASE acronym: EcoS12
Org_num: 69871
All begin OGM52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21275 | restriction endonuclease | |||
| 21280 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS12ORF21280P |
| 21285 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS12ORF21280P |
| 21290 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS12ORF21280P |
| 21295 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS12DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS12ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 10200 | phosphohydrolase | |||
| 10205 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS12DcmP |
| 10210 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS12DcmP |
| 10215 | drug/metabolite exporter YedA | |||
| 13740 | DUF3927 family protein | |||
| 13755 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS12ORF13755P |
| 13760 | TrmB family transcriptional regulator | |||
| 16010 | helix-turn-helix domain-containing protein | |||
| 16015 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS12ORF16015P | |
| 16020 | 71 aa hypothetical protein | |||
| 22945 | response regulator receiver domain | |||
| 22950 | R | EcosS3ORF15775P (100% identity) | EcoS12ORF22955P | |
| 22955 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS12ORF22955P | |
| 22960 | conjugal transfer protein TraG N-terminal | |||
| 23195 | 182 aa hypothetical protein | |||
| 23200 | M | M.Kmi495ORF8460P (100% identity) | M.EcoS12ORF23200P | |
| 23205 | 175 aa hypothetical protein | |||
| plasmid pS12-1027 | ||||
| 26790 | 73 aa hypothetical protein | |||
| 26795 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS12ORF26795P | |
| 26800 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21270 | BrnT family toxin | |||
| 21275 | R | Ecou021MrrP (100% identity) | EcoS12MrrP | |
| 21280 | type I restriction-modification system subunit | |||
| 21610 | glycosyltransferase | |||
| 21615 | R | EcosS3McrBP (100% identity) | EcoS12McrBP | |
| 21620 | R | EcosS9McrCP (100% identity) | EcoS12McrCP | |
| 21625 | 195 aa hypothetical protein | |||