Escherichia coli S9 |
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Putative Escherichia coli S9 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,071,232 bp | CP107122 |
| plasmid pS9-S4K58-1: | 171,301 bp | CP107123 |
REBASE acronym: EcosS9
Org_num: 69881
All begin OGM51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3150 | endoribonuclease SymE | |||
| 3155 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosS9ORF3165P |
| 3160 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosS9ORF3165P |
| 3165 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosS9ORF3165P |
| 3170 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2805 | helix-turn-helix domain-containing protein | |||
| 2810 | M | M1.EcosS3ORF17125P (100% identity) | GGTCTC | M1.EcosS9ORF2810P |
| 2815 | M | M2.EcosS3ORF17125P (100% identity) | GGTCTC | M2.EcosS9ORF2810P |
| 2820 | R | EcosS3ORF17125P (100% identity) | GGTCTC | EcosS9ORF2810P |
| 2825 | McrC family protein | |||
| 8410 | 71 aa hypothetical protein | |||
| 8415 | M | M.KpnYN1ORFGP (89% identity) | M.EcosS9ORF8415P | |
| 8420 | helix-turn-helix domain-containing protein | |||
| 10675 | TrmB family transcriptional regulator | |||
| 10680 | M | M.EcosS3ORF25050P (100% identity) | A | M.EcosS9ORF10680P |
| 10695 | DUF3927 family protein | |||
| 14250 | drug/metabolite exporter YedA | |||
| 14255 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosS9DcmP |
| 14260 | M | M.EcosS3DcmP (100% identity) | CCWGG | M.EcosS9DcmP |
| 14265 | phosphohydrolase | |||
| 21355 | DNA-binding transcriptional regulator Fis | |||
| 21360 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosS9ORF21360P |
| 21365 | DUF2556 family protein | |||
| 21965 | ribulose-phosphate 3-epimerase | |||
| 21970 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosS9DamP |
| 21975 | cell division protein DamX | |||
| plasmid pS9-S4K58-1 | ||||
| 25810 | 73 aa hypothetical protein | |||
| 25815 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosS9ORF25815P | |
| 25820 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2820 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2825 | R | EcosS3McrCP (100% identity) | EcosS9McrCP | |
| 2830 | R | EcosS3McrBP (76% identity) | EcosS9McrBP | |
| 2835 | IS3-like element ISEc52 family transposase | |||
| 3165 | type I restriction-modification system subunit | |||
| 3170 | R | Ecou021MrrP (100% identity) | EcosS9MrrP | |
| 3175 | BrnT family toxin | |||