Escherichia coli S4 |
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Putative Escherichia coli S4 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,226,065 bp | CP107140 |
| plasmid pS4-78: | 137,474 bp | CP107141 |
REBASE acronym: EcoS4
Org_num: 69876
All begin OGM46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10385 | 60 aa hypothetical protein | |||
| 10390 | R | EcoW004ORF12170P (100% identity) | EcoS4ORF10405P | |
| 10395 | S | S.Mmo48659ORF2735P (100% identity) | S.EcoS4ORF10405P | |
| 10400 | AAA family ATPase | |||
| 10405 | M | M.Mmo48659ORF2735P (100% identity) | M.EcoS4ORF10405P | |
| 10410 | transposase domain-containing protein | |||
| 18120 | endoribonuclease SymE | |||
| 18125 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS4ORF18135P |
| 18130 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS4ORF18135P |
| 18135 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS4ORF18135P |
| 18140 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2905 | 50 aa hypothetical protein | |||
| 2925 | M | M.Ecod58ORF7600P (100% identity) | A | M.EcoS4ORF2925P |
| 2930 | TrmB family transcriptional regulator | |||
| 3805 | drug/metabolite exporter YedA | |||
| 3810 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS4DcmP |
| 3815 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS4DcmP |
| 3820 | phosphohydrolase | |||
| 11415 | DNA-binding transcriptional regulator Fis | |||
| 11420 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS4ORF11420P |
| 11425 | DUF2556 family protein | |||
| 12015 | ribulose-phosphate 3-epimerase | |||
| 12020 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS4DamP |
| 12025 | cell division protein DamX | |||
| 16455 | conjugal transfer protein TraG N-terminal | |||
| 16460 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS4ORF16460P | |
| 16465 | R | EcosS3ORF15775P (100% identity) | EcoS4ORF16460P | |
| 16470 | response regulator receiver domain | |||
| 23385 | 71 aa hypothetical protein | |||
| 23390 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS4ORF23390P | |
| 23395 | helix-turn-helix domain-containing protein | |||
| 25645 | TrmB family transcriptional regulator | |||
| 25650 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS4ORF25650P |
| 25665 | DUF3927 family protein | |||
| plasmid pS4-78 | ||||
| 26495 | 73 aa hypothetical protein | |||
| 26500 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS4ORF26500P | |
| 26505 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17790 | 195 aa hypothetical protein | |||
| 17795 | R | EcosS9McrCP (100% identity) | EcoS4McrCP | |
| 17800 | R | EcosS3McrBP (100% identity) | EcoS4McrBP | |
| 17805 | glycosyltransferase | |||
| 18135 | type I restriction-modification system subunit | |||
| 18140 | R | Ecou021MrrP (100% identity) | EcoS4MrrP | |
| 18145 | BrnT family toxin | |||