Escherichia coli S3 |
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Putative Escherichia coli S3 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
Complete sequence: 5,127,186 bp
GenBank #: CP107142
REBASE acronym: EcosS3
Org_num: 69875
All begin OGM45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12625 | AAA family ATPase | |||
| 12630 | S | S.EcoN07AORF23055P (100% identity) | S.EcosS3ORF12635P | |
| 12635 | M | M.EcoN07AORF23055P (100% identity) | M.EcosS3ORF12635P | |
| 12640 | R | EcoN07AORF23055P (100% identity) | EcosS3ORF12635P | |
| 12645 | transposase | |||
| 17465 | endoribonuclease SymE | |||
| 17470 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosS3ORF17480P |
| 17475 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosS3ORF17480P |
| 17480 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosS3ORF17480P |
| 17485 | restriction endonuclease | |||
| 19290 | ash family protein | |||
| 19295 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosS3ORF19300P |
| 19300 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosS3ORF19300P |
| 19305 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosS3ORF19300P |
| 19310 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2900 | sialate O-acetylesterase | |||
| 2905 | M | M.EcosR8ORF13190P (43% identity) | M1.EcosS3ORF2905P | |
| 2910 | TrmB family transcriptional regulator | |||
| 2915 | R | R1.EcosR8ORF13210P (100% identity) | GTCGAC | R1.EcosS3ORF2905P |
| 2920 | R | R2.EcosR8ORF13210P (100% identity) | GTCGAC | R2.EcosS3ORF2905P |
| 2925 | M | M.EcosR8ORF13210P (100% identity) | GTCGAC | M2.EcosS3ORF2905P |
| 2930 | antiterminator Q family protein | |||
| 3800 | drug/metabolite exporter YedA | |||
| 3805 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosS3DcmP |
| 3810 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosS3DcmP |
| 3815 | phosphohydrolase | |||
| 10510 | DNA-binding transcriptional regulator Fis | |||
| 10515 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosS3ORF10515P |
| 10520 | DUF2556 family protein | |||
| 11110 | ribulose-phosphate 3-epimerase | |||
| 11115 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosS3DamP |
| 11120 | cell division protein DamX | |||
| 17120 | helix-turn-helix domain-containing protein | |||
| 17125 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosS3ORF17125P |
| 17130 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosS3ORF17125P |
| 17135 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosS3ORF17125P |
| 17140 | McrC family protein | |||
| 22785 | 71 aa hypothetical protein | |||
| 22790 | M | M.KpnYN1ORFGP (89% identity) | M.EcosS3ORF22790P | |
| 22795 | helix-turn-helix domain-containing protein | |||
| 25045 | TrmB family transcriptional regulator | |||
| 25050 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosS3ORF25050P |
| 25065 | DUF3927 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17135 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17140 | R | EcosS9McrCP (100% identity) | EcosS3McrCP | |
| 17145 | R | EcosS2McrBP (100% identity) | EcosS3McrBP | |
| 17150 | glycosyltransferase | |||
| 17480 | type I restriction-modification system subunit | |||
| 17485 | R | Ecou021MrrP (100% identity) | EcosS3MrrP | |
| 17490 | BrnT family toxin | |||