Escherichia coli S2 |
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Putative Escherichia coli S2 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,118,474 bp | CP107143 |
| plasmid pS2-S1K81-2: | 111,932 bp | CP107145 |
REBASE acronym: EcosS2
Org_num: 69874
All begin OGM44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17420 | endoribonuclease SymE | |||
| 17425 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosS2ORF17435P |
| 17430 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosS2ORF17435P |
| 17435 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosS2ORF17435P |
| 17440 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3460 | drug/metabolite exporter YedA | |||
| 3465 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosS2DcmP |
| 3470 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosS2DcmP |
| 3475 | phosphohydrolase | |||
| 10930 | DNA-binding transcriptional regulator Fis | |||
| 10935 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosS2ORF10935P |
| 10940 | DUF2556 family protein | |||
| 11530 | ribulose-phosphate 3-epimerase | |||
| 11535 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosS2DamP |
| 11540 | cell division protein DamX | |||
| 17075 | helix-turn-helix domain-containing protein | |||
| 17080 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosS2ORF17080P |
| 17085 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosS2ORF17080P |
| 17090 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosS2ORF17080P |
| 17095 | McrC family protein | |||
| 22760 | 71 aa hypothetical protein | |||
| 22765 | M | M.KpnYN1ORFGP (89% identity) | M.EcosS2ORF22765P | |
| 22770 | helix-turn-helix domain-containing protein | |||
| 24980 | TrmB family transcriptional regulator | |||
| 24985 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosS2ORF24985P |
| 25000 | DUF3927 family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3670 | SpnT protein | |||
| 3675 | M | M.EcosR7ORF18680P (100% identity) | M.EcosS2ORF3675P | |
| 3680 | R | Ecost88ORF24685P (100% identity) | EcosS2ORF3675P | |
| 3685 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17090 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17095 | R | EcosS9McrCP (100% identity) | EcosS2McrCP | |
| 17100 | R | EcosS3McrBP (100% identity) | EcosS2McrBP | |
| 17105 | glycosyltransferase | |||
| 17435 | type I restriction-modification system subunit | |||
| 17440 | R | Ecou021MrrP (100% identity) | EcosS2MrrP | |
| 17445 | BrnT family toxin | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pS2-S1K81-2 | ||||
| 26335 | 76 aa hypothetical protein | |||
| 26340 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcosS2ORF26340P |
| 26345 | 269 aa hypothetical protein | |||