Escherichia coli SM107 |
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Putative Escherichia coli SM107 RM systems
Ref: Bao,D. unpublished
REBASE ref # 33707
| Sequence length: | GenBank #: | |
| Chromosome: | 5,166,015 bp | CP130667 |
| plasmid pSM107_NDM: | 119,850 bp | CP130668 |
REBASE acronym: Eco07
Org_num: 69595
All begin Q4S51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4410 | transposase | |||
| 4415 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco07ORF4420P |
| 4420 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco07ORF4420P |
| 4425 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco07ORF4420P |
| 4430 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1880 | cell division protein DamX | |||
| 1885 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco07DamP |
| 1890 | ribulose-phosphate 3-epimerase | |||
| 2435 | DUF2556 family protein | |||
| 2440 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco07ORF2440P |
| 2445 | DNA-binding transcriptional regulator Fis | |||
| 3520 | transposase | |||
| 3525 | RM | SflLIN17ORF3140P (100% identity) | Eco07ORF3525P | |
| 3530 | DEAD/DEAH box helicase | |||
| 5110 | IS1-like element IS1B family transposase | |||
| 5115 | R | EcoTHO010ORF9060P (100% identity) | Eco07ORF5115P | |
| 5120 | helix-turn-helix transcriptional regulator | |||
| 10215 | phosphohydrolase | |||
| 10220 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.Eco07DcmP |
| 10225 | V | V.EcosPA11DcmP (100% identity) | V.Eco07DcmP | |
| 10230 | drug/metabolite exporter YedA | |||
| 18765 | DUF1317 family protein | |||
| 18770 | M | M.EcoLR46ORF38360P (99% identity) | M.Eco07ORF18770P | |
| 18775 | cell division protein ZapA | |||
| 20875 | HNH endonuclease | |||
| 20880 | R | EcoW619ORFAP (96% identity) | Eco07ORF20880P | |
| 20885 | 100 aa hypothetical protein | |||
| 21215 | osmoprotectant transport activator ProQ | |||
| 21220 | M | M.SflFF24DndBP (100% identity) | M.Eco07DndBP | |
| 21225 | DNA phosphorothioation system sulfurtransferase | |||
| 21220 | DNA sulfur modification protein DndB | |||
| 21225 | M | M.SflFF24DndCP (100% identity) | M.Eco07DndCP | |
| 21230 | DNA sulfur modification protein DndD | |||
| 21225 | DNA phosphorothioation system sulfurtransferase | |||
| 21230 | M | M.SflFF24DndDP (100% identity) | M.Eco07DndDP | |
| 21235 | DNA sulfur modification protein DndE | |||
| 21230 | DNA sulfur modification protein DndD | |||
| 21235 | M | M.SflFF24DndEP (100% identity) | M.Eco07DndEP | |
| 21240 | DGQHR domain-containing protein | |||
| 21250 | accessory gene regulator B family protein | |||
| 21255 | R | EcotcmA3DptHP (100% identity) | Eco07DptHP | |
| 21260 | DNA phosphorothioation-dependent restriction | |||
| 21255 | DNA phosphorothioation-dependent restriction | |||
| 21260 | R | SflFF24DptGP (100% identity) | Eco07DptGP | |
| 21265 | DNA phosphorothioation-dependent restriction | |||
| 21260 | DNA phosphorothioation-dependent restriction | |||
| 21265 | R | SflFF24DptFP (100% identity) | Eco07DptFP | |
| 21270 | integrase | |||
| 23070 | LexA family transcriptional regulator | |||
| 23075 | M | M.EcoS133I (100% identity) | GATC | M.Eco07ORF23075P |
| 23080 | PerC family transcriptional regulator | |||
| plasmid pSM107_NDM | ||||
| 25145 | recombinase family protein | |||
| 25150 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco07ORF25155P |
| 25155 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.Eco07ORF25155P |
| 25160 | IS1 family transposase | |||
| 25315 | 103 aa hypothetical protein | |||
| 25320 | M | M.SspPIBORF23080P (100% identity) | M.Eco07ORF25320P | |
| 25325 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20885 | 100 aa hypothetical protein | |||
| 20890 | R | Ecos19ORF20250P (100% identity) | Eco07ORF20895P | |
| 20895 | M | M.EcoXH990ORF24545P (99% identity) | M.Eco07ORF20895P | |
| 20900 | SNF2-related protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20675 | endoribonuclease SymE | |||
| 20680 | R | EcoXH990GmrSDP (55% identity) | Eco07GmrSDP | |
| 20685 | R | SflLIN8GmrSDP (42% identity) | Eco07GmrSP | |
| 20690 | cytoplasmic protein | |||