Escherichia coli MS20654 |
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Putative Escherichia coli MS20654 RM systems
Ref: Nhu,N.T.K. et al. unpublished
REBASE ref # 37246
| Sequence length: | GenBank #: | |
| Chromosome: | 5,051,478 bp | CP082083 |
| plasmid pMS20654: | 151,904 bp | CP082084 |
REBASE acronym: Eco20654
Org_num: 69582
All begin K6133_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23985 | endoribonuclease SymE | |||
| 23990 | S | S.EcosS1ORF16790P (85% identity) | S.Eco20654ORF24005P | |
| 23995 | IS3 family transposase | |||
| 24000 | 65 aa hypothetical protein | |||
| 24005 | M | M.Ecoppa1ORF6185P (100% identity) | M.Eco20654ORF24005P | |
| 24010 | R | EcosS1ORF16790P (100% identity) | Eco20654ORF24005P | |
| 24015 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2725 | TrmB family transcriptional regulator | |||
| 2730 | M | M.Ecoppa6ORF4450P (99% identity) | M.Eco20654ORF2730P | |
| 2735 | 63 aa hypothetical protein | |||
| 8875 | replication endonuclease | |||
| 8880 | M | M.EcoWH333ORF4405P (100% identity) | TGGCCA | M.Eco20654ORF8880P |
| 8885 | AAA family ATPase | |||
| 13995 | PerC family transcriptional regulator | |||
| 14000 | M | M.EcoPYO2ORF17175P (100% identity) | M.Eco20654ORF14000P | |
| 14005 | DUF1382 family protein | |||
| 14880 | LexA family transcriptional regulator | |||
| 14885 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco20654ORF14885P |
| 14890 | PerC family transcriptional regulator | |||
| 18220 | DNA-binding transcriptional regulator Fis | |||
| 18225 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco20654ORF18225P |
| 18230 | DUF2556 family protein | |||
| 18820 | ribulose-phosphate 3-epimerase | |||
| 18825 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco20654DamP |
| 18830 | cell division protein DamX | |||
| 23740 | 59 aa hypothetical protein | |||
| 23745 | R | EcoPEC0010ORF20615P (96% identity) | Eco20654ORF23745P | |
| 23750 | HNH endonuclease | |||
| 24220 | PerC family transcriptional regulator | |||
| 24225 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco20654ORF24225P |
| 24230 | LexA family transcriptional regulator | |||
| plasmid pMS20654 | ||||
| 25330 | 97 aa hypothetical protein | |||
| 25335 | M | M.Sen527ORF25750P (100% identity) | M.Eco20654ORF25335P | |
| 25340 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14670 | DinI-like family protein | |||
| 14675 | R | EspFAAGmrSDP (52% identity) | Eco20654GmrSD2P | |
| 14680 | IS3 family transposase | |||
| 14680 | IS3 family transposase | |||
| 14685 | R | EspFAAGmrSDP (47% identity) | Eco20654GmrSDP | |
| 14690 | recombinase family protein | |||
| 24010 | type I restriction-modification system | |||
| 24015 | R | EcosS1MrrP (100% identity) | Eco20654MrrP | |
| 24020 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6155 | recombination protein NinB | |||
| 6160 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco20654ORF6160P |
| 6165 | NinE family protein | |||