Escherichia coli MS20675 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli MS20675 RM systems
Ref: Nhu,N.T.K. et al. unpublished
REBASE ref # 37246
| Sequence length: | GenBank #: | |
| Chromosome: | 5,091,604 bp | CP082056 |
| plasmid pMS20675A: | 128,293 bp | CP082057 |
| plasmid pMS20675B: | 92,494 bp | CP082058 |
| plasmid pMS20675C: | 75,306 bp | CP082059 |
REBASE acronym: Eco0675
Org_num: 69589
All begin K6138_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24270 | endoribonuclease SymE | |||
| 24275 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco0675ORF24280P |
| 24280 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco0675ORF24280P |
| 24285 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco0675ORF24280P |
| 24290 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6640 | recombination protein NinB | |||
| 6645 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco0675ORF6645P |
| 6650 | NinE family protein | |||
| 10905 | drug/metabolite exporter YedA | |||
| 10910 | V | V.Ecostr9DcmP (74% identity) | CCWGG | V.Eco0675DcmP |
| 10915 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco0675DcmP |
| 10920 | phosphohydrolase | |||
| 11495 | 71 aa hypothetical protein | |||
| 11500 | M | M.KaeCRE8ORF15605P (100% identity) | M.Eco0675ORF11500P | |
| 11505 | helix-turn-helix domain-containing protein | |||
| 18365 | DNA-binding transcriptional regulator Fis | |||
| 18370 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.Eco0675ORF18370P |
| 18375 | DUF2556 family protein | |||
| 18895 | ribulose-phosphate 3-epimerase | |||
| 18900 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco0675DamP |
| 18905 | cell division protein DamX | |||
| plasmid pMS20675A | ||||
| 24800 | 102 aa hypothetical protein | |||
| 24805 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco0675ORF24805P |
| 24810 | 73 aa hypothetical protein | |||
| 25165 | EAL domain-containing protein | |||
| 25170 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco0675ORF25175P |
| 25175 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.Eco0675ORF25175P |
| 25180 | IS1 family transposase | |||
| plasmid pMS20675B | ||||
| 25715 | 73 aa hypothetical protein | |||
| 25720 | M | M.Sso866ORF27155P (100% identity) | M.Eco0675ORF25720P | |
| 25725 | 104 aa hypothetical protein | |||
| plasmid pMS20675C | ||||
| 26320 | 103 aa hypothetical protein | |||
| 26325 | M | M.EcosB2CORFHP (100% identity) | M.Eco0675ORF26325P | |
| 26330 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24260 | R | Ecoo241McrCP (100% identity) | Eco0675McrCP | |
| 24265 | R | SenHNK130McrBP (100% identity) | Eco0675McrBP | |
| 24270 | endoribonuclease SymE | |||
| 24285 | type I restriction-modification system | |||
| 24290 | R | Ssp28760MrrP (100% identity) | Eco0675MrrP | |
| 24295 | GTPase | |||