Escherichia coli CE0007a |
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Putative Escherichia coli CE0007a RM systems
Ref: Burgess,S.A. et al. unpublished
REBASE ref # 37116
| Sequence length: | GenBank #: | |
| Chromosome: | 5,271,527 bp | CP119011 |
| plasmid pCE0007a: | 174,562 bp | CP119012 |
REBASE acronym: Eco07a
Org_num: 68947
All begin PY718_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4020 | 322 aa hypothetical protein | |||
| 4025 | R | EcoXH993ORF23720P (100% identity) | CACNNNNNNNCTGG | Eco07aORF4030P |
| 4030 | M | M.EcoUM1887ORF20145P (100% identity) | CACNNNNNNNCTGG | M.Eco07aORF4030P |
| 4035 | S | S.EcoUM1887ORF20145P (100% identity) | CACNNNNNNNCTGG | S.Eco07aORF4030P |
| 4040 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 180 | NinE family protein | |||
| 185 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco07aORF185P |
| 190 | recombination protein NinB | |||
| 9800 | cell division protein DamX | |||
| 9805 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco07aDamP |
| 9810 | ribulose-phosphate 3-epimerase | |||
| 10330 | DUF2556 family protein | |||
| 10335 | M | M.EcoR47ORF4025P (100% identity) | ATGCAT | M.Eco07aORF10335P |
| 10340 | DNA-binding transcriptional regulator Fis | |||
| 14570 | DUF1382 family protein | |||
| 14575 | M | M.EcoLc41ORF6210P (100% identity) | M.Eco07aORF14575P | |
| 14580 | PerC family transcriptional regulator | |||
| 17380 | recombination protein NinB | |||
| 17385 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco07aORF17385P |
| 17390 | NinE family protein | |||
| 18225 | ATP-binding protein | |||
| 18230 | M | M.Ecoppa4ORF685P (100% identity) | M.Eco07aORF18230P | |
| 18235 | 92 aa hypothetical protein | |||
| plasmid pCE0007a | ||||
| 25935 | IS1 family transposase | |||
| 25940 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.Eco07aORF25940P |
| 25945 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco07aORF25940P |
| 25950 | IS6-like element IS26 family transposase | |||
| 26450 | 103 aa hypothetical protein | |||
| 26455 | M | M.SenS318ORF60P (100% identity) | M.Eco07aORF26455P | |
| 26460 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5035 | LPS O-antigen chain length determinant protein | |||
| 5040 | R | Kpn0718ORF815P (100% identity) | ACCACC | Eco07aORF5045P |
| 5045 | M | M.Eco26aORF23835P (100% identity) | ACCACC | M.Eco07aORF5045P |
| 5050 | S8 family peptidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4045 | DUF1524 domain-containing protein | |||
| 4050 | R | SflLIN8GmrSDP (42% identity) | Eco07aGmrSP | |
| 4055 | cytoplasmic protein | |||
| 17050 | tyrosine-type recombinase/integrase | |||
| 17055 | R | EcoPSJ14ORF16010P (100% identity) | Eco07aORF17055P | |
| 17060 | 115 aa hypothetical protein | |||