Escherichia coli TUM9754 |
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Putative Escherichia coli TUM9754 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,784,280 bp | CP128939 |
| plasmid pMTY9754_IncFIB-I: | 152,942 bp | CP128940 |
| plasmid pMTY9754_IncHI1B: | 103,767 bp | CP128941 |
| plasmid pMTY9754_IncN: | 48,260 bp | CP128943 |
REBASE acronym: Eco9754
Org_num: 69002
All begin QVM96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20305 | HNH endonuclease | |||
| 20315 | S | S.EcoS1632ORFHP (88% identity) | S1.Eco9754ORF20315P | |
| 20320 | R | EcoSCU103ORF3030P (18% identity) | Eco9754ORF20315AP | |
| 20325 | IS3 family transposase | |||
| 20330 | R | EcoS1632ORFHBP (99% identity) | Eco9754ORF20315BP | |
| 20335 | helix-turn-helix transcriptional regulator | |||
| 20340 | 164 aa hypothetical protein | |||
| 20345 | 281 aa hypothetical protein | |||
| 20350 | recombinase family protein | |||
| 20355 | 253 aa hypothetical protein | |||
| ??? | S | S2.EcoP61ORF19865P (100% identity) | S2.Eco9754ORF20315P | |
| 20370 | NADPH-dependent aldehyde reductase Ahr | |||
| 21095 | transposase | |||
| 21100 | R | EcoLH85aORF4700P (100% identity) | Eco9754ORF21105P | |
| 21105 | M | M.Ecos81ORF3955P (58% identity) | M.Eco9754ORF21105P | |
| 21110 | IS5-like element ISEc35 family transposase | |||
| plasmid pMTY9754_IncHI1B | ||||
| 25025 | type II toxin-antitoxin system Phd/YefM family | |||
| 25030 | M | M.EcosS142ORF43560P (100% identity) | M.Eco9754ORF25030P | |
| 25035 | S | S.EcosS142ORF43560P (100% identity) | S1.Eco9754ORF25030P | |
| 25040 | R | EcoS1632ORFBP (100% identity) | Eco9754ORF25030P | |
| 25045 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1975 | cell division protein DamX | |||
| 1980 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco9754DamP |
| 1985 | ribulose-phosphate 3-epimerase | |||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco9754ORF2610P |
| 2615 | tyrosine-type recombinase/integrase | |||
| 5600 | TraR/DksA family transcriptional regulator | |||
| 5605 | M | M.EcoC9120ORF3045P (97% identity) | GATC | M.Eco9754ORF5605P |
| 5610 | replication endonuclease | |||
| 9490 | HD domain-containing protein | |||
| 9495 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco9754DcmP |
| 9500 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco9754DcmP |
| 9505 | drug/metabolite exporter YedA | |||
| 15300 | replication endonuclease | |||
| 15305 | M | M.EcoS1632ORFIP (100% identity) | GATC | M.Eco9754ORF15305P |
| 15310 | TraR/DksA family transcriptional regulator | |||
| 18270 | phage holin, lambda family | |||
| 18275 | M | M.EcoS6685ORFBBP (100% identity) | M.Eco9754ORF18275P | |
| 18280 | 67 aa hypothetical protein | |||
| 18310 | LexA family transcriptional regulator | |||
| 18315 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Eco9754ORF18315P |
| 18320 | PerC family transcriptional regulator | |||
| 20300 | HNH endonuclease | |||
| 20305 | R | SflSTLE4ORF19250P (61% identity) | Eco9754ORF20305P | |
| 20310 | IS1 family transposase | |||
| 22000 | LexA family transcriptional regulator | |||
| 22005 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco9754ORF22005P |
| 22010 | PerC family transcriptional regulator | |||
| plasmid pMTY9754_IncFIB-I | ||||
| 24240 | 104 aa hypothetical protein | |||
| 24245 | M | M.EcoM9754ORF47080P (100% identity) | M.Eco9754ORF24245P | |
| 24250 | 73 aa hypothetical protein | |||
| plasmid pMTY9754_IncHI1B | ||||
| 24805 | IS3-like element IS3 family transposase | |||
| 24810 | R | SflFF67ORF22305P (100% identity) | GCWGC | Eco9754ORF24810P |
| 24815 | XRE family transcriptional regulator | |||
| plasmid pMTY9754_IncN | ||||
| 25550 | EAL domain-containing protein | |||
| 25555 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco9754ORF25560P |
| 25560 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco9754ORF25560P |
| 25565 | IS1 family transposase | |||