Escherichia coli TUM2330 |
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Putative Escherichia coli TUM2330 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,991,111 bp | CP128958 |
| plasmid pMTY2330_IncFII: | 74,427 bp | CP128960 |
| plasmid pMTY2330_IncN: | 50,698 bp | CP128961 |
| plasmid pMTY2330_IncY: | 93,433 bp | CP128959 |
REBASE acronym: Eco2330
Org_num: 68999
All begin QVM93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11695 | DUF262 domain-containing HNH endonuclease family | |||
| 11700 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | Eco2330ORF11705P |
| 11705 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco2330ORF11705P |
| 11710 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.Eco2330ORF11705P |
| 11715 | endoribonuclease SymE | |||
| 11935 | DUF4942 domain-containing protein | |||
| 11940 | M | M.EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | M.Eco2330ORF11940P |
| 11945 | S | S.EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | S.Eco2330ORF11940P |
| 11950 | R | EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | Eco2330ORF11940P |
| 11960 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1155 | phosphohydrolase | |||
| 1160 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco2330DcmP |
| 1165 | V | V.EcosE1DcmP (74% identity) | V.Eco2330DcmP | |
| 1170 | drug/metabolite exporter YedA | |||
| 11455 | RusA family crossover junction | |||
| 11460 | M | M.EcosA32ORF3630P (100% identity) | GATC | M.Eco2330ORF11460P |
| 11465 | PerC family transcriptional regulator | |||
| 11915 | HNH endonuclease | |||
| 11920 | R | EcoZ151ORF20895P (100% identity) | Eco2330ORF11920P | |
| 11925 | McrC family protein | |||
| 17360 | DUF2556 family protein | |||
| 17365 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco2330ORF17365P |
| 17370 | DNA-binding transcriptional regulator Fis | |||
| plasmid pMTY2330_IncFII | ||||
| 24255 | 97 aa hypothetical protein | |||
| 24260 | M | M.Xca80ORFEP (100% identity) | M.Eco2330ORF24260P | |
| 24265 | 73 aa hypothetical protein | |||
| plasmid pMTY2330_IncN | ||||
| 24670 | EAL domain-containing protein | |||
| 24675 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco2330ORF24680P |
| 24680 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco2330ORF24680P |
| 24685 | IS1 family transposase | |||
| plasmid pMTY2330_IncY | ||||
| 24095 | tellurite/colicin resistance protein | |||
| 24115 | M | M.Sen9860ORF25540P (100% identity) | M.Eco2330ORF24115P | |
| 24120 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11715 | endoribonuclease SymE | |||
| 11720 | R | EcoM2330GmrSDP (55% identity) | Eco2330GmrSDP | |
| 11725 | R | SflLIN8GmrSDP (42% identity) | Eco2330GmrSP | |
| 11730 | 15 aa hypothetical protein | |||
| 11920 | HNH endonuclease | |||
| 11925 | R | EcoZ151McrCP (100% identity) | Eco2330McrCP | |
| 11930 | R | EcoZ151McrBP (100% identity) | Eco2330McrBP | |
| 11935 | DUF4942 domain-containing protein | |||