Escherichia coli TUM13770 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli TUM13770 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,980,977 bp | CP128916 |
| plasmid pMTY13770_IncF: | 137,068 bp | CP128917 |
| plasmid pMTY13770_IncN: | 49,758 bp | CP128918 |
REBASE acronym: Eco13770
Org_num: 68987
All begin QVN12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18945 | type IV toxin-antitoxin system AbiEi family | |||
| 18950 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco13770ORF18955P |
| 18955 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco13770ORF18955P |
| 18960 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco13770ORF18955P |
| 18965 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1070 | helix-turn-helix domain-containing protein | |||
| 1075 | M | M.KaeCRE8ORF15605P (100% identity) | M.Eco13770ORF1075P | |
| 1080 | 71 aa hypothetical protein | |||
| 1970 | cell division protein DamX | |||
| 1975 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13770DamP |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 2570 | DUF2556 family protein | |||
| 2575 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco13770ORF2575P |
| 2580 | DNA-binding transcriptional regulator Fis | |||
| 9960 | phosphohydrolase | |||
| 9965 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco13770DcmP |
| 9970 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco13770DcmP |
| 9975 | drug/metabolite exporter YedA | |||
| 20895 | McrC family protein | |||
| 20900 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco13770ORF20905P |
| 20905 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco13770ORF20905P |
| 20910 | M | M1.EcosS9ORF2810P (87% identity) | M2.Eco13770ORF20905P | |
| 20915 | helix-turn-helix domain-containing protein | |||
| 21185 | 174 aa hypothetical protein | |||
| ??? | M | M.Sen5773ORF4471P (99% identity) | M.Eco13770ORF21190P | |
| ??? | R | EcoS0575ORF20490P (97% identity) | Eco13770ORF21190P | |
| 21225 | response regulator receiver domain | |||
| plasmid pMTY13770_IncF | ||||
| 25165 | 73 aa hypothetical protein | |||
| 25170 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco13770ORF25170P |
| 25175 | 103 aa hypothetical protein | |||
| plasmid pMTY13770_IncN | ||||
| 25320 | EAL domain-containing protein | |||
| 25325 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco13770ORF25330P |
| 25330 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco13770ORF25330P |
| 25335 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20885 | glycosyltransferase | |||
| 20890 | R | EcosS3McrBP (100% identity) | Eco13770McrBP | |
| 20895 | R | EcosS9McrCP (100% identity) | Eco13770McrCP | |
| 20900 | Alw26I/Eco31I/Esp3I family type II restriction | |||