Escherichia coli TUM1887 |
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Putative Escherichia coli TUM1887 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,879,343 bp | CP128963 |
| plasmid pMTY1887_IncF: | 127,328 bp | CP128964 |
| plasmid pMTY1887_IncN: | 47,664 bp | CP128967 |
| plasmid pMTY1887_untypable_1: | 95,639 bp | CP128965 |
REBASE acronym: EcoUM1887
Org_num: 68998
All begin QVM92_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1725 | cell division protein DamX | |||
| 1730 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoUM1887DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoUM1887ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 6155 | TraR/DksA family transcriptional regulator | |||
| 6160 | M | M.EcoM1887ORF11940P (100% identity) | GATC | M.EcoUM1887ORF6160P |
| 6165 | replication endonuclease | |||
| 9655 | phosphohydrolase | |||
| 9660 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoUM1887DcmP |
| 9665 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoUM1887DcmP |
| 9670 | drug/metabolite exporter YedA | |||
| plasmid pMTY1887_IncF | ||||
| 24235 | 73 aa hypothetical protein | |||
| 24240 | M | M.SflN92ORF24820P (100% identity) | M.EcoUM1887ORF24240P | |
| 24245 | 101 aa hypothetical protein | |||
| plasmid pMTY1887_IncN | ||||
| 25380 | EAL domain-containing protein | |||
| 25385 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoUM1887ORF25390P |
| 25390 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoUM1887ORF25390P |
| 25395 | IS1 family transposase | |||
| plasmid pMTY1887_untypable_1 | ||||
| 24480 | recombination-associated protein RdgC | |||
| 24485 | M | M.EcoM1887ORF46790P (100% identity) | M.EcoUM1887ORF24485P | |
| 24500 | TerB family tellurite resistance protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20160 | DUF1524 domain-containing protein | |||
| 20165 | R | SflLIN8GmrSDP (42% identity) | EcoUM1887GmrSP | |
| 20170 | cytoplasmic protein | |||