Escherichia coli strain_88 |
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Putative Escherichia coli strain_88 RM systems
Ref: El Aila,N.A. et al. unpublished
REBASE ref # 37121
Complete sequence: 5,341,472 bp
GenBank #: CP128446
REBASE acronym: Ecost88
Org_num: 69021
All begin QT511_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20840 | restriction endonuclease | |||
| 20845 | M | M.Ecos15ORF18200P (100% identity) | GGYANNNNNGTNG | M.Ecost88ORF20845P |
| 20850 | S | S.Ecos15ORF18200P (100% identity) | GGYANNNNNGTNG | S.Ecost88ORF20845P |
| 20855 | R | Ecos15ORF18200P (100% identity) | GGYANNNNNGTNG | Ecost88ORF20845P |
| 20860 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 725 | DNA-binding transcriptional regulator Fis | |||
| 730 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Ecost88ORF730P |
| 735 | DUF2556 family protein | |||
| 1280 | cell division protein DamX | |||
| 1285 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecost88DamP |
| 1290 | ribulose-phosphate 3-epimerase | |||
| 15100 | phosphohydrolase | |||
| 15105 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Ecost88DcmP |
| 15110 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Ecost88DcmP |
| 15115 | drug/metabolite exporter YedA | |||
| 15555 | NinE family protein | |||
| 15560 | M | M.Ecos15ORF13195P (100% identity) | GATC | M.Ecost88ORF15560P |
| 15565 | recombination protein NinB | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22105 | threonine--tRNA ligase | |||
| 22110 | R | SenL0047ORF24180P (100% identity) | Ecost88ORF22115P | |
| 22115 | M | M.SenL0047ORF24180P (100% identity) | M.Ecost88ORF22115P | |
| 22120 | Rop family plasmid primer RNA-binding protein | |||
| 24680 | site-specific DNA-methyltransferase | |||
| 24685 | R | EcosS2ORF3675P (100% identity) | Ecost88ORF24685P | |
| 24690 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20835 | 34 aa hypothetical protein | |||
| 20840 | R | Ecos15MrrP (100% identity) | Ecost88MrrP | |
| 20845 | class I SAM-dependent DNA methyltransferase | |||