Escherichia coli O1:K1:H7 |
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Putative Escherichia coli O1:K1:H7 RM systems
Ref: Ha,E.-J. unpublished
REBASE ref # 37057
| Sequence length: | GenBank #: | |
| Chromosome: | 5,173,757 bp | CP126944 |
| Chromosome: | 5,173,209 bp | CP126942 |
REBASE acronym:
Org_num:
All begin QQA28_, QQA29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21275 | adenine/cytosine-specific restriction | |||
| 21280 | R | Eco16002ORF21290P (100% identity) | AACNNNNNNGTGC | Eco18006ORF21285P |
| 21285 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco18006ORF21285P |
| 21290 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco18006ORF21285P |
| 21295 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco16002DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2375 | DUF2556 family protein | |||
| 2380 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco16002ORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 7210 | DUF1382 family protein | |||
| 7215 | M | M.EcoE51ORF20240P (100% identity) | GATC | M.Eco16002ORF7215P |
| 7220 | PerC family transcriptional regulator | |||
| 10655 | phosphohydrolase | |||
| 10660 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco16002DcmP |
| 10665 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco16002DcmP |
| 10670 | drug/metabolite exporter YedA | |||
| 13935 | 39 aa hypothetical protein | |||
| 13955 | M | M.SboBSORF1444P (100% identity) | A | M.Eco16002ORF13955P |
| 13960 | TrmB family transcriptional regulator | |||
| 16595 | replication endonuclease | |||
| 16600 | M | M.Ecoppa1ORF11250P (100% identity) | GATC | M.Eco16002ORF16600P |
| 16605 | TraR/DksA family transcriptional regulator | |||
| 21060 | LexA family transcriptional regulator | |||
| 21065 | M | M.Eco18006ORF21060P (100% identity) | GATC | M.Eco16002ORF21065P |
| 21070 | PerC family transcriptional regulator | |||
| Chromosome | ||||
| 2375 | DUF2556 family protein | |||
| 2380 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco18006ORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 7210 | DUF1382 family protein | |||
| 7215 | M | M.EcoE51ORF20240P (100% identity) | GATC | M.Eco18006ORF7215P |
| 7220 | PerC family transcriptional regulator | |||
| 10655 | phosphohydrolase | |||
| 10660 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco18006DcmP |
| 10665 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco18006DcmP |
| 10670 | drug/metabolite exporter YedA | |||
| 13935 | 39 aa hypothetical protein | |||
| 13955 | M | M.SboBSORF1444P (100% identity) | A | M.Eco18006ORF13955P |
| 13960 | TrmB family transcriptional regulator | |||
| 16590 | replication endonuclease | |||
| 16595 | M | M.Ecoppa1ORF11250P (100% identity) | GATC | M.Eco18006ORF16595P |
| 16600 | TraR/DksA family transcriptional regulator | |||
| 21055 | LexA family transcriptional regulator | |||
| 21060 | M | M.Eco16002ORF21065P (100% identity) | GATC | M.Eco18006ORF21060P |
| 21065 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4495 | AIPR family protein | |||
| 4500 | M | M.EcoLS45ORF22315P (100% identity) | GTCTC | M.Eco16002ORF4500P |
| 4505 | R | EcoM1881ORF3760P (100% identity) | GTCTC | Eco16002ORF4500P |
| 4510 | transposase | |||
| Chromosome | ||||
| 4495 | AIPR family protein | |||
| 4500 | M | M.EcoLS45ORF22315P (100% identity) | GTCTC | M.Eco18006ORF4500P |
| 4505 | R | EcoM1881ORF3760P (100% identity) | GTCTC | Eco18006ORF4500P |
| 4510 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6595 | recombinase family protein | |||
| 6600 | R | EspFAAGmrSDP (100% identity) | Eco16002GmrSDP | |
| 6605 | DinI-like family protein | |||
| 21275 | GTPase | |||
| 21280 | R | EcosS1MrrP (100% identity) | Eco16002MrrP | |
| 21285 | type I restriction-modification system | |||
| 21300 | endoribonuclease SymE | |||
| 21305 | R | Eco3920McrBP (100% identity) | Eco16002McrBP | |
| 21310 | R | SenHNK130McrCP (100% identity) | Eco16002McrCP | |
| Chromosome | ||||
| 6595 | recombinase family protein | |||
| 6600 | R | EspFAAGmrSDP (100% identity) | Eco18006GmrSDP | |
| 6605 | DinI-like family protein | |||
| 21270 | GTPase | |||
| 21275 | R | EcosS1MrrP (100% identity) | Eco18006MrrP | |
| 21280 | type I restriction-modification system | |||
| 21295 | endoribonuclease SymE | |||
| 21300 | R | Eco3920McrBP (100% identity) | Eco18006McrBP | |
| 21305 | R | SenHNK130McrCP (100% identity) | Eco18006McrCP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14815 | NinE family protein | |||
| 14820 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco16002ORF14820P |
| 14825 | recombination protein NinB | |||
| Chromosome | ||||
| 14815 | NinE family protein | |||
| 14820 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco18006ORF14820P |
| 14825 | recombination protein NinB | |||