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Putative Helicobacter pylori BS27-2 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,651,345 bp
GenBank #: CP122955
REBASE acronym: HpyBS272
Org_num: 68426
All begin QAP03_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
370 | LPP20 family lipoprotein | |||
375 | S | S.HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | S.HpyBS272ORF385P |
380 | CAAX protease | |||
385 | M | M.HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | M.HpyBS272ORF385P |
390 | R | HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | HpyBS272ORF385P |
395 | SprT family zinc-dependent metalloprotease | |||
2895 | RNA degradosome polyphosphate kinase | |||
2905 | S | S.HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | S.HpyBS272ORF2910P |
2910 | M | M.HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | M.HpyBS272ORF2910P |
2915 | R | HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | HpyBS272ORF2910P |
2920 | motility associated factor glycosyltransferase | |||
4685 | outer membrane beta-barrel protein HofF | |||
4690 | S | S.HpyBS271ORF3230P (100% identity) | S.HpyBS272ORF4690P | |
4695 | heavy metal translocating P-type ATPase | |||
4970 | hydroxyethylthiazole kinase | |||
4975 | R | HpyBS271ORF2940P (100% identity) | HpyBS272ORFAP | |
4980 | S | S.HpyBS271ORF2940P (100% identity) | S.HpyBS272ORFAP | |
4985 | DNA cytosine methyltransferase | |||
4990 | HaeIII family restriction endonuclease | |||
??? | M | M.Hpy05124ORFDP (10% identity) | M1.HpyBS272ORFAP | |
??? | M | M.HpyC1119ORFMP (6% identity) | M2.HpyBS272ORFAP | |
5000 | COG2958 family protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | type III restriction-modification system | |||
50 | RM | HpyBS271ORF7870P (100% identity) | HpyBS272ORF50P | |
55 | 187 aa hypothetical protein | |||
270 | ComF family protein | |||
275 | RM | HpyBS271ORF7645P (100% identity) | CYANNNNNNTTC | HpyBS272ORF275P |
280 | S | S1.HpyBS271ORF7645P (100% identity) | S1.HpyBS272ORF275P | |
285 | S | S2.HpyBS271ORF7645P (100% identity) | S2.HpyBS272ORF275P | |
290 | DNA polymerase I | |||
465 | 67 aa hypothetical protein | |||
470 | M | M.HpyBS271ORF7450P (100% identity) | TGCA | M.HpyBS272ORF470P |
475 | R | HpyBS271ORF7450P (100% identity) | TGCA | HpyBS272ORF470P |
480 | cytochrome c1 | |||
985 | agmatine/peptidylarginine deiminase | |||
990 | M | M2.HpyBS271ORF6925P (100% identity) | CCTC | M1.HpyBS272ORF990P |
995 | M | M1.HpyBS271ORF6925P (100% identity) | CCTC | M2.HpyBS272ORF990P |
1000 | R | HpyBS271ORF6925P (100% identity) | CCTC | HpyBS272ORF990P |
1005 | site-specific DNA-methyltransferase | |||
1000 | HNH endonuclease signature motif containing | |||
1005 | M | M.HpyKG9X (100% identity) | GTSAC | M.HpyBS272ORF1005P |
1010 | R | HpyR10XIP (100% identity) | GTSAC | HpyBS272ORF1005P |
1015 | sodium/proline symporter PutP | |||
1200 | HTH domain-containing protein | |||
1205 | M | M.HpyBS271ORF6710P (100% identity) | GATC | M.HpyBS272ORF1205P |
1210 | alpha-1,2-fucosyltransferase | |||
2020 | exodeoxyribonuclease VII large subunit | |||
2025 | M | M.HpyBS271ORF5895P (100% identity) | TCGA | M.HpyBS272ORF2025P |
2030 | 204 aa hypothetical protein | |||
2275 | polysaccharide deacetylase | |||
2280 | R | HpyBS271ORF5635P (100% identity) | CTNAG | HpyBS272ORF2285P |
2285 | M | M.HpyBS271ORF5635P (100% identity) | CTNAG | M.HpyBS272ORF2285P |
2290 | 125 aa hypothetical protein | |||
2990 | Hop family outer membrane protein HopJ/HopK | |||
2995 | M | M.HpyBS271ORF4925P (100% identity) | ATTAAT | M.HpyBS272ORF2995P |
3000 | glycosyltransferase family 9 protein | |||
3155 | 259 aa hypothetical protein | |||
3160 | M | M.HpyBS271ORF4760P (100% identity) | ACNGT | M.HpyBS272ORF3160P |
3165 | R | HpyBS271ORF4760P (100% identity) | ACNGT | HpyBS272ORF3160P |
3170 | DNA cytosine methyltransferase | |||
3165 | GIY-YIG nuclease family protein | |||
3170 | M | M.HpyBS271ORF4750P (100% identity) | ACGT | M.HpyBS272ORF3170P |
3175 | R | HpyBS271ORF4750P (100% identity) | ACGT | HpyBS272ORF3170P |
3180 | catalase | |||
3265 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
3270 | M | M.HpyBS271ORF4650P (100% identity) | GTAC | M.HpyBS272ORF3270P |
3275 | R | HpyBS271ORF4650P (100% identity) | GTAC | HpyBS272ORF3270P |
3280 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
4095 | (Fe-S)-binding protein | |||
4100 | RM | HpyBS271ORF3820P (99% identity) | HpyBS272ORF4100P | |
4105 | outer membrane protein | |||
4185 | 3-5 exonuclease | |||
4190 | M | M.Hpyfe55ORF3835P (100% identity) | CCNNGG | M.HpyBS272ORF4190P |
4195 | R | HpyQ56ORFLP (100% identity) | CCNNGG | HpyBS272ORF4190P |
4200 | 3-5 exonuclease | |||
5255 | flagellar hook protein FlgE | |||
5260 | R | HpyBS271ORF2655P (100% identity) | GTNNAC | HpyBS272ORF5265P |
5265 | M | M.HpyBS271ORF2655P (100% identity) | GTNNAC | M.HpyBS272ORF5265P |
5270 | ATP-dependent helicase | |||
5945 | FkbM family methyltransferase | |||
5950 | M | M.HpyBS271ORF1970P (100% identity) | TCNNGA | M.HpyBS272ORF5950P |
5955 | R | HpyBS271ORF1970P (100% identity) | TCNNGA | HpyBS272ORF5950P |
5960 | Laminin subunit alpha-2 precursor | |||
6140 | 144 aa hypothetical protein | |||
6145 | M | M.HpyBS271ORF1775P (100% identity) | GCGC | M.HpyBS272ORF6145P |
6150 | flagellar biosynthesis anti-sigma factor FlgM | |||
6595 | HAD family hydrolase | |||
6600 | M | M.HpyBS271ORF1320P (100% identity) | CATG | M.HpyBS272ORF6600P |
6605 | integrase | |||
7465 | DNA methyltransferase | |||
7470 | R | HpyBS271ORF445P (100% identity) | GANTC | HpyBS272ORF7475P |
7475 | M | M.HpyBS271ORF445P (100% identity) | GANTC | M.HpyBS272ORF7475P |
7480 | DNA methyltransferase | |||
7480 | DNA methyltransferase | |||
7485 | RM | HpyBS271ORF430P (94% identity) | HpyBS272ORF7485P | |
7490 | carboxylating nicotinate-nucleotide | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyBS271ORF7880P (100% identity) | M.HpyBS272ORF40P | |
45 | R | HpyBS271ORF7880P (100% identity) | HpyBS272ORF40P | |
50 | Eco57I restriction-modification methylase | |||
7540 | copper response regulator transcription factor | |||
??? | M | M.HpyBS271ORF370P (100% identity) | M.HpyBS272ORF7545P | |
7555 | R | HpyBS271ORF370P (99% identity) | HpyBS272ORF7545P | |
7560 | rod shape-determining protein MreC | |||
7605 | DNA/RNA non-specific endonuclease | |||
7610 | M | M.HpyBS271ORF310P (100% identity) | M.HpyBS272ORF7610P | |
7615 | R | HpyBS271ORF310P (96% identity) | HpyBS272ORF7610P | |
7620 | biotin synthase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
3310 | type I glutamate--ammonia ligase | |||
3315 | R | HpyBS271GmrSDP (100% identity) | HpyBS272GmrSDP | |
3320 | 50S ribosomal protein L9 | |||
3900 | tetratricopeptide repeat protein | |||
3905 | R | HpyBS271GmrSD2P (100% identity) | HpyBS272GmrSD2P | |
3910 | NAD(P)H-dependent oxidoreductase |