Escherichia coli Q5 |
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Putative Escherichia coli Q5 RM systems
Ref: Mihailovskaya,V. et al. unpublished
REBASE ref # 36976
Complete sequence: 4,948,277 bp
GenBank #: CP127255
REBASE acronym: EcoQ5
Org_num: 68208
All begin QQ972_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7740 | 40 aa hypothetical protein | |||
| 7745 | R | EcoTob1ORF1075P (99% identity) | EcoQ5ORF7755P | |
| 7750 | S | S.EcoA37ORF3460P (99% identity) | S.EcoQ5ORF7755P | |
| 7755 | M | M.EcoA37ORF3460P (100% identity) | M.EcoQ5ORF7755P | |
| 7760 | DUF262 domain-containing protein | |||
| 23685 | AAA family ATPase | |||
| 23690 | S | S.EcosC41ORF22705P (100% identity) | CTANNNNNNCTTC | S.EcoQ5ORF23695P |
| 23695 | M | M.EcosEC2ORF410P (100% identity) | CTANNNNNNCTTC | M.EcoQ5ORF23695P |
| 23700 | R | Ecoi012ORF18325P (100% identity) | CTANNNNNNCTTC | EcoQ5ORF23695P |
| 23705 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1695 | DNA-binding transcriptional regulator Fis | |||
| 1700 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoQ5ORF1700P |
| 1705 | DUF2556 family protein | |||
| 2295 | ribulose-phosphate 3-epimerase | |||
| 2300 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoQ5DamP |
| 2305 | cell division protein DamX | |||
| 6045 | PerC family transcriptional regulator | |||
| 6050 | M | M.SenS709ORF800P (100% identity) | GATC | M.EcoQ5ORF6050P |
| 6055 | LexA family transcriptional regulator | |||
| 6085 | 67 aa hypothetical protein | |||
| 6090 | M | M.Sso63633ORF22290P (100% identity) | M.EcoQ5ORF6090P | |
| 6095 | phage lysis protein EssD | |||
| 7495 | 100 aa hypothetical protein | |||
| 7500 | R | Sso8ORF19860P (98% identity) | EcoQ5ORF7500P | |
| 7505 | HNH endonuclease | |||
| 12385 | TraR/DksA family transcriptional regulator | |||
| 12390 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.EcoQ5ORF12390P |
| 12395 | replication endonuclease | |||
| 18150 | drug/metabolite exporter YedA | |||
| 18155 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoQ5DcmP |
| 18160 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoQ5DcmP |
| 18165 | phosphohydrolase | |||
| 18395 | LexA family transcriptional regulator | |||
| 18400 | M | M.EcoSCU487ORF7365P (100% identity) | GATC | M.EcoQ5ORF18400P |
| 18405 | PerC family transcriptional regulator | |||
| 20680 | Com family DNA-binding transcriptional | |||
| 20685 | M | M.Sen7113ORF20540P (100% identity) | M.EcoQ5ORF20685P | |
| 20690 | flagella biosynthesis regulator Flk | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7480 | SNF2-related protein | |||
| 7485 | M | M.EcoA37I (100% identity) | CARCCC | M.EcoQ5ORF7485P |
| 7490 | R | EcoA37IIP (99% identity) | CARCCC | EcoQ5ORF7485P |
| 7495 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7755 | class I SAM-dependent DNA methyltransferase | |||
| 7760 | R | EcoW004GmrDP (38% identity) | EcoQ5GmrSDP | |
| 7765 | DUF262 domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14060 | recombination protein NinB | |||
| 14065 | M | M.EcosC25ORF16305P (99% identity) | GATC | M.EcoQ5ORF14065P |
| 14070 | NinE family protein | |||