Escherichia coli YZMc17-1 |
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Putative Escherichia coli YZMc17-1 RM systems
Ref: Yin,Y. unpublished
REBASE ref # 34560
| Sequence length: | GenBank #: | |
| Chromosome: | 4,846,976 bp | CP123255 |
| plasmid pYZMc17-1_100k: | 100,394 bp | CP123256 |
| plasmid pYZMc17-1_NDM-5_80K: | 80,091 bp | CP123257 |
REBASE acronym: Ecoc171
Org_num: 68005
All begin N4680_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3920 | transposase | |||
| 3925 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Ecoc171ORF3930P |
| 3930 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Ecoc171ORF3930P |
| 3935 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Ecoc171ORF3930P |
| 3940 | AAA family ATPase | |||
| 9495 | IS1-like element IS1A family transposase | |||
| 9500 | R | EcosNDM5ORF9185P (100% identity) | Ecoc171ORF9500P | |
| 9505 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1655 | cell division protein DamX | |||
| 1660 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoc171DamP |
| 1665 | ribulose-phosphate 3-epimerase | |||
| 9180 | phosphohydrolase | |||
| 9185 | M | M.EcosNDM5DcmP (100% identity) | CCWGG | M.Ecoc171DcmP |
| 9190 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Ecoc171DcmP |
| 9195 | drug/metabolite exporter YedA | |||
| 17935 | transposase | |||
| 17940 | RM | SflLIN17ORF3140P (100% identity) | Ecoc171ORF17940P | |
| 17945 | DEAD/DEAH box helicase | |||
| 18375 | phage lysis protein EssD | |||
| 18380 | M | M.Sso63633ORF22290P (100% identity) | M.Ecoc171ORF18380P | |
| 18385 | TrmB family transcriptional regulator | |||
| 20405 | 50 aa hypothetical protein | |||
| 20410 | R | EcoES1ORF23735P (100% identity) | Ecoc171ORF20410P | |
| 20415 | HNH endonuclease | |||
| 20445 | DUF3833 family protein | |||
| 20450 | R | EcoZYB39ORF460P (75% identity) | Ecoc171ORF20450P | |
| 20455 | integrase | |||
| plasmid pYZMc17-1_100k | ||||
| 23915 | SPFH domain-containing protein | |||
| 23930 | M | M.Eco127AORF26950P (99% identity) | M.Ecoc171ORF23930P | |
| 23935 | recombination-associated protein RdgC | |||
| plasmid pYZMc17-1_NDM-5_80K | ||||
| 24180 | 97 aa hypothetical protein | |||
| 24185 | M | M.Xca80ORFEP (100% identity) | M.Ecoc171ORF24185P | |
| 24190 | 73 aa hypothetical protein | |||