Escherichia coli YZMc3-1 |
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Putative Escherichia coli YZMc3-1 RM systems
Ref: Yin,Y. unpublished
REBASE ref # 34560
| Sequence length: | GenBank #: | |
| Chromosome: | 4,820,591 bp | CP123244 |
| plasmid pYZMc3-1_NDM-9_226k: | 226,504 bp | CP123245 |
REBASE acronym: EcoMc31
Org_num: 68006
All begin N4691_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4140 | transposase | |||
| 4145 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoMc31ORF4150P |
| 4150 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoMc31ORF4150P |
| 4155 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoMc31ORF4150P |
| 4160 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1865 | cell division protein DamX | |||
| 1870 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoMc31DamP |
| 1875 | ribulose-phosphate 3-epimerase | |||
| 4830 | helix-turn-helix transcriptional regulator | |||
| 4835 | R | EcoXH990ORF7415P (100% identity) | GCWGC | EcoMc31ORF4835P |
| 4840 | glycoside hydrolase family 15 protein | |||
| 5990 | adhesin-like autotransporter YpjA/EhaD | |||
| 5995 | R | Sens24184ORF5380P (100% identity) | C | EcoMc31ORF5995P |
| 6000 | primase-like DNA-binding domain-containing | |||
| 9445 | phosphohydrolase | |||
| 9450 | M | M.EcoXJ63DcmP (99% identity) | CCWGG | M.EcoMc31DcmP |
| 9455 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoMc31DcmP |
| 9460 | drug/metabolite exporter YedA | |||
| 19810 | IS3 family transposase | |||
| 19815 | M | M.EcoSE11DndBP (100% identity) | M.EcoMc31DndBP | |
| 19820 | DNA phosphorothioation system sulfurtransferase | |||
| 19815 | DNA sulfur modification protein DndB | |||
| 19820 | M | M.EcoSE11DndCP (100% identity) | M.EcoMc31DndCP | |
| 19825 | DNA sulfur modification protein DndD | |||
| 19820 | DNA phosphorothioation system sulfurtransferase | |||
| 19825 | M | M.EcoC719DndDP (100% identity) | M.EcoMc31DndDP | |
| 19830 | DNA sulfur modification protein DndE | |||
| 19825 | DNA sulfur modification protein DndD | |||
| 19830 | M | M.EcoSE11DndEP (100% identity) | M.EcoMc31DndEP | |
| 19835 | 206 aa hypothetical protein | |||
| 19840 | restriction endonuclease | |||
| 19845 | R | Eco4978DptHP (100% identity) | EcoMc31DptHP | |
| 19850 | DNA phosphorothioation-dependent restriction | |||
| 19845 | DNA phosphorothioation-dependent restriction | |||
| 19850 | R | Eco4978DptGP (100% identity) | EcoMc31DptGP | |
| 19855 | DNA phosphorothioation-dependent restriction | |||
| 19850 | DNA phosphorothioation-dependent restriction | |||
| 19855 | R | EcoSE11DptFP (100% identity) | EcoMc31DptFP | |
| 19860 | Arm DNA-binding domain-containing protein | |||
| plasmid pYZMc3-1_NDM-9_226k | ||||
| 23370 | 55 aa hypothetical protein | |||
| 23375 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoMc31ORF23375P |
| 23380 | thermonuclease family protein | |||
| 23925 | 48 aa hypothetical protein | |||
| 23930 | M | M.YpsF1ORFBP (100% identity) | M.EcoMc31ORF23930P | |
| 23935 | 202 aa hypothetical protein | |||
| 24040 | DNA-binding protein | |||
| 24045 | M | M.YpsF1ORFDP (95% identity) | M.EcoMc31ORF24045P | |
| 24050 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19605 | endoribonuclease SymE | |||
| 19610 | R | EcoXH990GmrSDP (55% identity) | EcoMc31GmrSDP | |
| 19615 | R | SflLIN8GmrSDP (42% identity) | EcoMc31GmrSP | |
| 19620 | cytoplasmic protein | |||
| 19835 | 206 aa hypothetical protein | |||
| 19840 | R | EcoSE11MrrP (99% identity) | EcoMc31MrrP | |