Escherichia coli YZLc1-3 |
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Putative Escherichia coli YZLc1-3 RM systems
Ref: Yin,Y. unpublished
REBASE ref # 34560
| Sequence length: | GenBank #: | |
| Chromosome: | 5,214,647 bp | CP123240 |
| plasmid pYZLc1-3_160k: | 160,923 bp | CP123241 |
REBASE acronym: Ecoc13
Org_num: 68003
All begin N4725_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22645 | AAA family ATPase | |||
| 22650 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Ecoc13ORF22655P |
| 22655 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Ecoc13ORF22655P |
| 22660 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Ecoc13ORF22655P |
| 22665 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2065 | cell division protein DamX | |||
| 2070 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoc13DamP |
| 2075 | ribulose-phosphate 3-epimerase | |||
| 7135 | DUF1382 family protein | |||
| 7140 | M | M.SspPIBORF6330P (100% identity) | GATC | M.Ecoc13ORF7140P |
| 7145 | PerC family transcriptional regulator | |||
| 10535 | phosphohydrolase | |||
| 10540 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Ecoc13DcmP |
| 10545 | V | V.EcosE1DcmP (74% identity) | V.Ecoc13DcmP | |
| 10550 | drug/metabolite exporter YedA | |||
| 21480 | McrC family protein | |||
| 21485 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoc13ORF21490P |
| 21490 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoc13ORF21490P |
| 21495 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoc13ORF21490P |
| 21500 | 75 aa hypothetical protein | |||
| 21810 | osmoprotectant transport activator ProQ | |||
| 21815 | M | M.SflFF24DndBP (100% identity) | M.Ecoc13DndBP | |
| 21820 | DNA phosphorothioation system sulfurtransferase | |||
| 21815 | DNA sulfur modification protein DndB | |||
| 21820 | M | M.SflFF24DndCP (100% identity) | M.Ecoc13DndCP | |
| 21825 | DNA sulfur modification protein DndD | |||
| 21820 | DNA phosphorothioation system sulfurtransferase | |||
| 21825 | M | M.SflFF24DndDP (100% identity) | M.Ecoc13DndDP | |
| 21830 | DNA sulfur modification protein DndE | |||
| 21825 | DNA sulfur modification protein DndD | |||
| 21830 | M | M.SflFF24DndEP (100% identity) | M.Ecoc13DndEP | |
| 21835 | DGQHR domain-containing protein | |||
| 21845 | accessory gene regulator B family protein | |||
| 21850 | R | SflFF24DptHP (99% identity) | Ecoc13DptHP | |
| 21855 | DNA phosphorothioation-dependent restriction | |||
| 21850 | DNA phosphorothioation-dependent restriction | |||
| 21855 | R | SflFF24DptGP (100% identity) | Ecoc13DptGP | |
| 21860 | DNA phosphorothioation-dependent restriction | |||
| 21855 | DNA phosphorothioation-dependent restriction | |||
| 21860 | R | SflFF24DptFP (100% identity) | Ecoc13DptFP | |
| 21865 | integrase | |||
| plasmid pYZLc1-3_160k | ||||
| 25665 | 73 aa hypothetical protein | |||
| 25670 | M | M.Xca80ORFEP (100% identity) | M.Ecoc13ORF25670P | |
| 25675 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21470 | glycosyltransferase | |||
| 21475 | R | EcosS3McrBP (100% identity) | Ecoc13McrBP | |
| 21480 | R | EcosS9McrCP (100% identity) | Ecoc13McrCP | |
| 21485 | Alw26I/Eco31I/Esp3I family type II restriction | |||