Escherichia coli JNE120442 |
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Putative Escherichia coli JNE120442 RM systems
Ref: Kubomura,A. et al. unpublished
REBASE ref # 36930
| Sequence length: | GenBank #: | |
| Chromosome: | 4,967,431 bp | AP027254 |
| plasmid pJNE120442-1: | 160,552 bp | AP027255 |
REBASE acronym: Eco442
Org_num: 67988
All begin JNE120442_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 46190 | toxic peptide regulated by antisense sRNA symR | |||
| 46200 | S | S.EcoSCU171ORF17935P (100% identity) | RTCANNNNNNNNRTRTC | S.Eco442ORF46210P |
| 46210 | M | M.Sdy49345I (98% identity) | RTCANNNNNNNNRTRTC | M.Eco442ORF46210P |
| 46220 | R | EcoSCU171ORF17935P (100% identity) | RTCANNNNNNNNRTRTC | Eco442ORF46210P |
| 46230 | 102 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2620 | lateral flagellar anti-sigma factor 28 protein | |||
| 2630 | R | Eco6C06ORF19785P (99% identity) | Eco442ORF2640P | |
| 2640 | M | M.EcoS7438ORFEP (99% identity) | M.Eco442ORF2640P | |
| 2650 | lateral flagellar P-ring addition protein | |||
| 11410 | 65 aa hypothetical protein | |||
| 11420 | M | M.EcoC041ORF2782P (100% identity) | M.Eco442ORF11420P | |
| 11430 | Shiga toxin 2 subunit A | |||
| 12220 | 162 aa hypothetical protein | |||
| 12230 | M | M.EcoSTEC411ORF14855P (100% identity) | GATC | M.Eco442ORF12230P |
| 12240 | repressor | |||
| 13940 | 65 aa hypothetical protein | |||
| 13950 | M | M.Ecos154ORF3040P (100% identity) | M.Eco442ORF13950P | |
| 13960 | 142 aa hypothetical protein | |||
| 17300 | 41 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (94% identity) | M.Eco442ORFAP | |
| 17320 | phage exclusion protein | |||
| 21870 | amino acid exporter for phenylalanine | |||
| 21880 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco442DcmP |
| 21890 | M | M.EcoS792DcmP (100% identity) | CCWGG | M.Eco442DcmP |
| 21900 | HD superfamily phosphohydrolase | |||
| 35750 | D-ribulose-5-phosphate 3-epimerase | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.Eco442DamP |
| 35770 | cell division protein DamX | |||
| 41300 | replication protein | |||
| 41310 | M | M.SspS13ORF1655P (100% identity) | GTCGAC | M.Eco442ORF41310P |
| 41320 | R | SspS13ORF1655P (99% identity) | GTCGAC | R1.Eco442ORF41310P |
| 41330 | R | R1.SenXB08ORF22340P (99% identity) | GTCGAC | R2.Eco442ORF41310P |
| 41340 | phage portal protein | |||
| 45790 | 59 aa hypothetical protein | |||
| ??? | R | SflFF17ORF19275P (100% identity) | Eco442ORF45800P | |
| 45820 | endonuclease | |||
| plasmid pJNE120442-1 | ||||
| 47570 | 300 aa hypothetical protein | |||
| 47580 | M | M.EcoV04ORF25795P (100% identity) | SAY | M.Eco442ORF47580P |
| 47590 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12630 | 63 aa hypothetical protein | |||
| 12640 | R | EcoSW4848GmrSD2P (99% identity) | Eco442GmrSD2P | |
| 12650 | 48 aa hypothetical protein | |||
| 46170 | 54 aa hypothetical protein | |||
| 46180 | R | EcoC9705GmrD2P (100% identity) | Eco442GmrSDP | |
| 46190 | toxic peptide regulated by antisense sRNA symR | |||