Escherichia coli KFS-D30 |
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Putative Escherichia coli KFS-D30 RM systems
Ref: Gomi,R. et al. unpublished
REBASE ref # 36781
| Sequence length: | GenBank #: | |
| Chromosome: | 4,998,622 bp | CP125004 |
| plasmid pKFS-D30_1: | 146,809 bp | CP125005 |
| plasmid pKFS-D30_2: | 110,850 bp | CP125006 |
REBASE acronym: EcoD30
Org_num: 67404
All begin QL143_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19160 | type IV toxin-antitoxin system AbiEi family | |||
| 19165 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoD30ORF19170P |
| 19170 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoD30ORF19170P |
| 19175 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoD30ORF19170P |
| 19180 | ash family protein | |||
| plasmid pKFS-D30_1 | ||||
| 25415 | IS1-like element IS1B family transposase | |||
| 25420 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoD30ORF25430P |
| 25425 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.EcoD30ORF25430P |
| 25430 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoD30ORF25430P |
| 25435 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1710 | cell division protein DamX | |||
| 1715 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoD30DamP |
| 1720 | ribulose-phosphate 3-epimerase | |||
| 2555 | DUF2556 family protein | |||
| 2560 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoD30ORF2560P |
| 2565 | DNA-binding transcriptional regulator Fis | |||
| 10155 | phosphohydrolase | |||
| 10160 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoD30DcmP |
| 10165 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoD30DcmP |
| 10170 | drug/metabolite exporter YedA | |||
| 21105 | McrC family protein | |||
| 21110 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoD30ORF21115P |
| 21115 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoD30ORF21115P |
| 21120 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoD30ORF21115P |
| 21125 | helix-turn-helix domain-containing protein | |||
| 21405 | response regulator receiver domain | |||
| 21410 | R | Ecos19ORF20635P (99% identity) | EcoD30ORF21410P | |
| 21415 | 97 aa hypothetical protein | |||
| plasmid pKFS-D30_1 | ||||
| 25355 | 73 aa hypothetical protein | |||
| 25360 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoD30ORF25360P |
| 25365 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21095 | glycosyltransferase | |||
| 21100 | R | EcosS3McrBP (100% identity) | EcoD30McrBP | |
| 21105 | R | EcosS9McrCP (100% identity) | EcoD30McrCP | |
| 21110 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pKFS-D30_2 | ||||
| 26080 | 76 aa hypothetical protein | |||
| 26085 | M | M.Ecoppa6ORF24465P (100% identity) | GATC | M.EcoD30ORF26085P |
| 26090 | 269 aa hypothetical protein | |||