Escherichia coli KFS-D21 |
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Putative Escherichia coli KFS-D21 RM systems
Ref: Gomi,R. et al. unpublished
REBASE ref # 36781
| Sequence length: | GenBank #: | |
| Chromosome: | 5,001,605 bp | CP125020 |
| plasmid pKFS-D21_1: | 95,063 bp | CP125022 |
| plasmid pKFS-D21_2: | 90,924 bp | CP125021 |
REBASE acronym: EcoD21
Org_num: 67401
All begin QL133_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6400 | 322 aa hypothetical protein | |||
| 6405 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoD21ORF6410P |
| 6410 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoD21ORF6410P |
| 6415 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.EcoD21ORF6410P |
| 6420 | endoribonuclease SymE | |||
| plasmid pKFS-D21_2 | ||||
| 24585 | IS1-like element IS1B family transposase | |||
| 24590 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoD21ORF24590P |
| 24595 | R | KpnKPH1ORF27575P (85% identity) | CAAYNNNNNCTGG | EcoD21ORF24590P |
| 24600 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1770 | replication endonuclease | |||
| 1775 | M | M.EcoEC0245ORF14995P (100% identity) | GATC | M.EcoD21ORF1775P |
| 1780 | TraR/DksA family transcriptional regulator | |||
| 12105 | cell division protein DamX | |||
| 12110 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoD21DamP |
| 12115 | ribulose-phosphate 3-epimerase | |||
| 12705 | DUF2556 family protein | |||
| 12710 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.EcoD21ORF12710P |
| 12715 | DNA-binding transcriptional regulator Fis | |||
| 20115 | phosphohydrolase | |||
| 20120 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoD21DcmP |
| 20125 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoD21DcmP |
| 20130 | drug/metabolite exporter YedA | |||
| plasmid pKFS-D21_1 | ||||
| 25090 | 73 aa hypothetical protein | |||
| 25095 | M | M.Sso80ORF24890P (100% identity) | M.EcoD21ORF25095P | |
| 25100 | 103 aa hypothetical protein | |||
| plasmid pKFS-D21_2 | ||||
| 24650 | 103 aa hypothetical protein | |||
| 24655 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoD21ORF24655P |
| 24660 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16310 | GTPase family protein | |||
| 16315 | M | M.EcoNH21ORF3075P (100% identity) | M.EcoD21ORF16315P | |
| 16320 | R | EcoNH21ORF3075P (100% identity) | EcoD21ORF16315P | |
| 16325 | inovirus Gp2 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6420 | endoribonuclease SymE | |||
| 6425 | R | Eho218GmrDP (53% identity) | EcoD21GmrDBP | |
| 6430 | R | Eho218GmrDP (40% identity) | EcoD21GmrDAP | |
| 6435 | Rpn family recombination-promoting | |||