Escherichia coli ETEC6329F |
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Putative Escherichia coli ETEC6329F RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,218,393 bp | CP122609 |
| plasmid unnamed1: | 92,006 bp | CP122610 |
| plasmid unnamed4: | 37,688 bp | CP122613 |
| plasmid unnamed7: | 98,928 bp | CP122616 |
REBASE acronym: Eco6329F
Org_num: 67381
All begin QDX10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3860 | 122 aa hypothetical protein | |||
| 3865 | R | EcoEC521ORF29600P (99% identity) | Eco6329FORF3875P | |
| 3870 | S | S.EcoC1745ORF3890P (100% identity) | S.Eco6329FORF3875P | |
| 3875 | M | M.EcoEC521ORF29600P (100% identity) | M.Eco6329FORF3875P | |
| 3880 | GTPase family protein | |||
| 22195 | DUF262 domain-containing HNH endonuclease family | |||
| 22200 | R | EcoXH993ORF23720P (100% identity) | Eco6329FORF22205P | |
| 22205 | M | M.EcoUM1887ORF20145P (100% identity) | M.Eco6329FORF22205P | |
| 22210 | S | S.EcoC1745ORF22540P (100% identity) | S.Eco6329FORF22205P | |
| 22215 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 370 | osmoprotectant transport activator ProQ | |||
| 375 | M | M.SflFF24DndBP (100% identity) | M.Eco6329FDndBP | |
| 380 | DNA phosphorothioation system sulfurtransferase | |||
| 375 | DNA sulfur modification protein DndB | |||
| 380 | M | M.SflFF24DndCP (100% identity) | M.Eco6329FDndCP | |
| 385 | DNA sulfur modification protein DndD | |||
| 380 | DNA phosphorothioation system sulfurtransferase | |||
| 385 | M | M.SflFF24DndDP (100% identity) | M.Eco6329FDndDP | |
| 390 | DNA sulfur modification protein DndE | |||
| 385 | DNA sulfur modification protein DndD | |||
| 390 | M | M.SflFF24DndEP (100% identity) | M.Eco6329FDndEP | |
| 395 | DNA phosphorothioation-associated DGQHR protein | |||
| 400 | 172 aa hypothetical protein | |||
| 405 | R | EcoC1744DptHP (100% identity) | Eco6329FDptHP | |
| 410 | DNA phosphorothioation-dependent restriction | |||
| 405 | DNA phosphorothioation-dependent restriction | |||
| 410 | R | SenLY67DptGP (100% identity) | Eco6329FDptGP | |
| 415 | DNA phosphorothioation-dependent restriction | |||
| 410 | DNA phosphorothioation-dependent restriction | |||
| 415 | R | SenLY67DptFP (100% identity) | Eco6329FDptFP | |
| 420 | integrase | |||
| 2010 | cell division protein DamX | |||
| 2015 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco6329FDamP |
| 2020 | ribulose-phosphate 3-epimerase | |||
| 2645 | DUF2556 family protein | |||
| 2650 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco6329FORF2650P |
| 2655 | DNA-binding transcriptional regulator Fis | |||
| 6165 | adhesin-like autotransporter YpjA/EhaD | |||
| 6170 | R | SenB82ORF5360P (100% identity) | Eco6329FORF6170P | |
| 6175 | primase-like DNA-binding domain-containing | |||
| 6350 | TrmB family transcriptional regulator | |||
| 6355 | M | M.EcoC1744ORF6450P (100% identity) | M.Eco6329FORF6355P | |
| 6365 | 132 aa hypothetical protein | |||
| 10550 | phosphohydrolase | |||
| 10555 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco6329FDcmP |
| 10560 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco6329FDcmP |
| 10565 | IS91 family transposase | |||
| 12820 | DUF977 family protein | |||
| 12825 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco6329FORF12825P | |
| 12830 | 60 aa hypothetical protein | |||
| 20335 | RusA family crossover junction | |||
| 20340 | M | M.EcoECO21ORF17780P (100% identity) | GATC | M.Eco6329FORF20340P |
| 20345 | PerC family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 26130 | 103 aa hypothetical protein | |||
| 26135 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco6329FORF26135P | |
| 26140 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 26915 | 73 aa hypothetical protein | |||
| 26920 | M | M.Sen527ORF25750P (100% identity) | M.Eco6329FORF26920P | |
| 26925 | 97 aa hypothetical protein | |||
| plasmid unnamed7 | ||||
| 27415 | 73 aa hypothetical protein | |||
| 27420 | M | M.SspPIBORF23080P (100% identity) | M.Eco6329FORF27420P | |
| 27425 | 103 aa hypothetical protein | |||