Escherichia coli ETEC4085 |
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Putative Escherichia coli ETEC4085 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,238,491 bp | CP122634 |
| plasmid unnamed2: | 129,439 bp | CP122636 |
| plasmid unnamed3: | 102,584 bp | CP122637 |
| plasmid unnamed4: | 106,966 bp | CP122638 |
| plasmid unnamed6: | 86,703 bp | CP122640 |
| plasmid unnamed7: | 98,561 bp | CP122641 |
REBASE acronym: Eco4085
Org_num: 67376
All begin QDW62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4115 | transposase | |||
| 4120 | R | Sen33866ORF23510P (100% identity) | TGANNNNNNCTTC | Eco4085ORF4125P |
| 4125 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco4085ORF4125P |
| 4130 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S1.Eco4085ORF4125P |
| 4135 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1760 | cell division protein DamX | |||
| 1765 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4085DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2385 | DUF2556 family protein | |||
| 2390 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco4085ORF2390P |
| 2395 | DNA-binding transcriptional regulator Fis | |||
| 5965 | TrmB family transcriptional regulator | |||
| 5970 | M | M.EcoC1744ORF6450P (100% identity) | M.Eco4085ORF5970P | |
| 5980 | 132 aa hypothetical protein | |||
| 6715 | DUF1382 family protein | |||
| 6720 | M | M.EcoCP83ORF14415P (100% identity) | M.Eco4085ORF6720P | |
| 6725 | PerC family transcriptional regulator | |||
| 7800 | recombination protein NinB | |||
| 7805 | M | M.Eco38C10ORF16610P (100% identity) | GATC | M.Eco4085ORF7805P |
| 7810 | NinE family protein | |||
| 10365 | HD domain-containing protein | |||
| 10370 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco4085DcmP |
| 10375 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco4085DcmP |
| 10380 | drug/metabolite exporter YedA | |||
| 12695 | DUF977 family protein | |||
| 12700 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco4085ORF12700P | |
| 12705 | 99 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 26240 | 73 aa hypothetical protein | |||
| 26245 | M | M.SenNS015ORFEP (100% identity) | SAY | M.Eco4085ORF26245P |
| 26250 | 103 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 26975 | 73 aa hypothetical protein | |||
| 26980 | M | M.EcoP006ORF270P (99% identity) | M.Eco4085ORF26980P | |
| 26985 | 101 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 27870 | group II intron reverse transcriptase/maturase | |||
| 27875 | M | M.EcosW25KORF25595P (100% identity) | M.Eco4085ORF27875P | |
| 27880 | 73 aa hypothetical protein | |||
| plasmid unnamed6 | ||||
| 28610 | recombination-associated protein RdgC | |||
| 28615 | M | M.Sen9860ORF25540P (100% identity) | M.Eco4085ORF28615P | |
| 28630 | SPFH domain-containing protein | |||
| plasmid unnamed7 | ||||
| 29000 | 73 aa hypothetical protein | |||
| 29005 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco4085ORF29005P |
| 29010 | 103 aa hypothetical protein | |||