Escherichia coli ETEC4077 |
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Putative Escherichia coli ETEC4077 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,190,196 bp | CP122648 |
| plasmid unnamed1: | 216,724 bp | CP122649 |
| plasmid unnamed3: | 31,040 bp | CP122651 |
REBASE acronym: Eco4077
Org_num: 67374
All begin QDY56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5915 | IS1 family transposase | |||
| 5920 | R | Sen12509ORF5865P (74% identity) | ACAYNNNNCTG | Eco4077ORF5935BP |
| 5925 | R | Eco4079ORF5930AP (100% identity) | ACAYNNNNCTG | Eco4077ORF5935AP |
| 5930 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco4077ORF5935P |
| 5935 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco4077ORF5935P |
| 5940 | integrase core domain-containing protein | |||
| 15395 | GTPase family protein | |||
| 15400 | M | M.EcoW1316ORF930P (100% identity) | M.Eco4077ORF15400P | |
| 15405 | S | S.EcoW1316ORF930P (100% identity) | S.Eco4077ORF15400P | |
| 15410 | R | EcoW1316ORF930P (100% identity) | Eco4077ORF15400P | |
| 15415 | IS5-like element ISKpn26 family transposase | |||
| 19870 | type IV toxin-antitoxin system AbiEi family | |||
| 19875 | R | EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | Eco4077ORF19880P |
| 19880 | M | M.EcoW1316ORF21120P (99% identity) | CAACNNNNGTT | M.Eco4077ORF19880P |
| 19885 | S | S.EcoC4070ORF19625P (100% identity) | CAACNNNNGTT | S.Eco4077ORF19880P |
| 19890 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4077DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.Eco4077ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6305 | Com family DNA-binding transcriptional | |||
| 6310 | M | M.EcoEC180ORF6030P (100% identity) | M.Eco4077ORF6310P | |
| 6315 | ribosome-associated translation inhibitor RaiA | |||
| 6805 | DUF1382 family protein | |||
| 6810 | M | M.SspPIBORF6330P (100% identity) | GATC | M.Eco4077ORF6810P |
| 6815 | PerC family transcriptional regulator | |||
| 12505 | DUF977 family protein | |||
| 12510 | M | M.EcoC4071ORF12110P (100% identity) | M.Eco4077ORF12510P | |
| 12515 | 139 aa hypothetical protein | |||
| 14130 | Shiga toxin Stx2e subunit A | |||
| 14150 | M | M.EcoW1316ORF2195P (100% identity) | M.Eco4077ORF14150P | |
| 14155 | TrmB family transcriptional regulator | |||
| 15815 | 92 aa hypothetical protein | |||
| 15820 | M | M.EcoW26ORF35400P (100% identity) | M.Eco4077ORF15820P | |
| 15825 | TrmB family transcriptional regulator | |||
| 23450 | LexA family transcriptional regulator | |||
| 23455 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco4077ORF23455P |
| 23460 | 28 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 26310 | DNA-binding protein | |||
| 26315 | M | M.Ype21801ORF197P (100% identity) | M.Eco4077ORF26315P | |
| 26320 | 273 aa hypothetical protein | |||
| 26835 | 56 aa hypothetical protein | |||
| 26840 | M | M.StyCORF187P (100% identity) | CCWGG | M.Eco4077ORF26840P |
| 26845 | thermonuclease family protein | |||
| plasmid unnamed3 | ||||
| 27265 | 101 aa hypothetical protein | |||
| 27270 | M | M.SflFF87ORF23240P (100% identity) | M.Eco4077ORF27270P | |
| 27275 | conjugative transfer relaxase/helicase TraI | |||