Escherichia coli ETEC4072 |
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Putative Escherichia coli ETEC4072 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,849,718 bp | CP122666 |
| plasmid unnamed1: | 66,133 bp | CP122667 |
| plasmid unnamed2: | 65,799 bp | CP122668 |
| plasmid unnamed4: | 7,480 bp | CP122670 |
| plasmid unnamed6: | 84,520 bp | CP122672 |
REBASE acronym: EcoC4072
Org_num: 67370
All begin QDW68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2270 | 58 aa hypothetical protein | |||
| 2275 | M | M.Ecos1613ORF5225P (99% identity) | CCAYNNNNNGTTY | M.EcoC4072ORF2275P |
| 2280 | S | S.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | S.EcoC4072ORF2275P |
| 2285 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 2290 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 2295 | R | Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | EcoC4072ORF2275P |
| 2300 | SprT family zinc-dependent metalloprotease | |||
| 8705 | adenine/cytosine-specific restriction | |||
| 8710 | R | Ecos15955ORF12100P (100% identity) | EcoC4072ORF8715P | |
| 8715 | M | M.Ecos15955ORF12100P (99% identity) | M.EcoC4072ORF8715P | |
| 8720 | S | S1.EcoC1736FORF21805P (93% identity) | S1.EcoC4072ORF8715P | |
| 8725 | S | S2.EcoC1736FORF21805P (100% identity) | S2.EcoC4072ORF8715P | |
| 8730 | 23 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 24170 | type II toxin-antitoxin system Phd/YefM family | |||
| 24175 | M | M.Eco4073ORF25025P (100% identity) | M.EcoC4072ORF24175P | |
| 24180 | S | S.Eco4073ORF25025P (100% identity) | S.EcoC4072ORF24175P | |
| 24185 | R | Eco4073ORF25025P (99% identity) | EcoC4072ORF24175P | |
| 24190 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 995 | Shiga toxin Stx2e subunit A | |||
| 1015 | M | M.Ecocq9ORF19465P (100% identity) | M.EcoC4072ORF1015P | |
| 1020 | TrmB family transcriptional regulator | |||
| 2805 | 92 aa hypothetical protein | |||
| 2810 | M | M.EcoW26ORF35400P (99% identity) | M.EcoC4072ORF2810P | |
| 2815 | TrmB family transcriptional regulator | |||
| 3500 | transposase | |||
| 3505 | RM | SflLIN17ORF3140P (100% identity) | EcoC4072ORF3505P | |
| 3510 | DEAD/DEAH box helicase | |||
| 6765 | 379 aa hypothetical protein | |||
| 6770 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoC4072ORF6775P |
| 6775 | M | M.Eco4073ORF18305P (100% identity) | M.EcoC4072ORF6775P | |
| 6780 | 257 aa hypothetical protein | |||
| 6830 | phage lysis protein EssD | |||
| 6835 | M | M.EcoC0426ORF21310P (99% identity) | M.EcoC4072ORF6835P | |
| 6840 | TrmB family transcriptional regulator | |||
| 13670 | cell division protein DamX | |||
| 13675 | M | M.EcoC1736FDamP (99% identity) | GATC | M.EcoC4072DamP |
| 13680 | ribulose-phosphate 3-epimerase | |||
| 14295 | DUF2556 family protein | |||
| 14300 | M | M.EcoC1736FORF2295P (100% identity) | ATGCAT | M.EcoC4072ORF14300P |
| 14305 | DNA-binding transcriptional regulator Fis | |||
| 18160 | Com family DNA-binding transcriptional | |||
| 18165 | M | M.SenYU39ORF1896P (100% identity) | M.EcoC4072ORF18165P | |
| 18170 | ribosome-associated translation inhibitor RaiA | |||
| 21355 | phosphohydrolase | |||
| 21360 | M | M.EcoC1737DcmP (99% identity) | M.EcoC4072DcmP | |
| ??? | V | V.EcoC1736FDcmP (100% identity) | V.EcoC4072DcmP | |
| 21370 | drug/metabolite exporter YedA | |||
| plasmid unnamed2 | ||||
| 24475 | 103 aa hypothetical protein | |||
| 24480 | M | M.Ecocq9ORF29710P (99% identity) | M.EcoC4072ORF24480P | |
| 24485 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 25200 | MbeD family mobilization/exclusion protein | |||
| 25205 | M | M.EcoH591ORF4942P (100% identity) | GGYRCC | M.EcoC4072ORF25205P |
| 25210 | R | SenUA39ORF5P (100% identity) | GGYRCC | EcoC4072ORF25205P |
| 25215 | IS91-like element IS91 family transposase | |||
| plasmid unnamed6 | ||||
| 25590 | 104 aa hypothetical protein | |||
| 25595 | M | M.SflN101ORF24625P (100% identity) | M.EcoC4072ORF25595P | |
| 25600 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8700 | GTPase | |||
| 8705 | R | EcoC1737MrrP (100% identity) | EcoC4072MrrP | |
| 8710 | type I restriction-modification system | |||