Escherichia coli AVS0542 |
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Putative Escherichia coli AVS0542 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,979,425 bp | CP124487 |
| plasmid pAVS0542-A: | 69,343 bp | CP124488 |
REBASE acronym: EcoS0542
Org_num: 67300
All begin QJP68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18805 | type IV toxin-antitoxin system AbiEi family | |||
| 18810 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0542ORF18815P |
| 18815 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0542ORF18815P |
| 18820 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0542ORF18815P |
| 18825 | ash family protein | |||
| plasmid pAVS0542-A | ||||
| 24550 | IS1-like element IS1A family transposase | |||
| 24555 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoS0542ORF24565P |
| 24560 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S1.EcoS0542ORF24565P |
| 24565 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoS0542ORF24565P |
| 24570 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0542DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0542ORF2310P |
| 2315 | DNA-binding transcriptional regulator Fis | |||
| 9735 | phosphohydrolase | |||
| 9740 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoS0542DcmP |
| 9745 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0542DcmP |
| 9750 | drug/metabolite exporter YedA | |||
| 20730 | McrC family protein | |||
| 20735 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0542ORF20740P |
| 20740 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0542ORF20740P |
| 20745 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0542ORF20740P |
| 20750 | helix-turn-helix domain-containing protein | |||
| 21030 | response regulator receiver domain | |||
| 21035 | R | Ecos19ORF20635P (100% identity) | EcoS0542ORF21035P | |
| 21040 | 97 aa hypothetical protein | |||
| plasmid pAVS0542-A | ||||
| 24490 | 73 aa hypothetical protein | |||
| 24495 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0542ORF24495P |
| 24500 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20720 | glycosyltransferase | |||
| 20725 | R | EcosS3McrBP (100% identity) | EcoS0542McrBP | |
| 20730 | R | EcosS9McrCP (100% identity) | EcoS0542McrCP | |
| 20735 | Alw26I/Eco31I/Esp3I family type II restriction | |||