Escherichia coli AVS0938 |
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Putative Escherichia coli AVS0938 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,288,679 bp | CP124362 |
| plasmid pAVS0938-A: | 161,776 bp | CP124363 |
| plasmid pAVS0938-B: | 84,254 bp | CP124364 |
REBASE acronym: EcoS0938
Org_num: 67319
All begin QJA98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18490 | endoribonuclease SymE | |||
| 18495 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0938ORF18505P |
| 18500 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0938ORF18505P |
| 18505 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0938ORF18505P |
| 18510 | restriction endonuclease | |||
| 20315 | ash family protein | |||
| 20320 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0938ORF20325P |
| 20325 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0938ORF20325P |
| 20330 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0938ORF20325P |
| 20335 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2915 | TrmB family transcriptional regulator | |||
| 2920 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS0938ORF2930P |
| 2925 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS0938ORF2930P |
| 2930 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoS0938ORF2930P |
| 2935 | antiterminator Q family protein | |||
| 3805 | drug/metabolite exporter YedA | |||
| 3810 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0938DcmP |
| 3815 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0938DcmP |
| 3820 | phosphohydrolase | |||
| 7955 | 121 aa hypothetical protein | |||
| 7960 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoS0938ORF7965P |
| 7965 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS0938ORF7965P |
| 7970 | 257 aa hypothetical protein | |||
| 8095 | phage lysis protein EssD | |||
| 8100 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS0938ORF8100P | |
| 8105 | 95 aa hypothetical protein | |||
| 8140 | LexA family transcriptional regulator | |||
| 8145 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS0938ORF8145P |
| 8150 | PerC family transcriptional regulator | |||
| 11930 | DNA-binding transcriptional regulator Fis | |||
| 11935 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0938ORF11935P |
| 11940 | DUF2556 family protein | |||
| 12530 | ribulose-phosphate 3-epimerase | |||
| 12535 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0938DamP |
| 12540 | cell division protein DamX | |||
| 16970 | conjugal transfer protein TraG N-terminal | |||
| 16975 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS0938ORF16975P | |
| 16980 | R | EcosS3ORF15775P (100% identity) | EcoS0938ORF16975P | |
| 16985 | response regulator receiver domain | |||
| 18140 | helix-turn-helix domain-containing protein | |||
| 18145 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0938ORF18145P |
| 18150 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0938ORF18145P |
| 18155 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0938ORF18145P |
| 18160 | McrC family protein | |||
| 23800 | 71 aa hypothetical protein | |||
| 23805 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0938ORF23805P | |
| 23810 | helix-turn-helix transcriptional regulator | |||
| 26075 | TrmB family transcriptional regulator | |||
| 26080 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS0938ORF26080P |
| 26095 | DUF3927 family protein | |||
| plasmid pAVS0938-A | ||||
| 26695 | 101 aa hypothetical protein | |||
| 26700 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS0938ORF26700P | |
| 26705 | 73 aa hypothetical protein | |||
| plasmid pAVS0938-B | ||||
| 27245 | 103 aa hypothetical protein | |||
| 27250 | M | M.SspPIBORF23080P (100% identity) | M.EcoS0938ORF27250P | |
| 27255 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4295 | SpnT protein | |||
| 4300 | M | M.EcosS2ORF3675P (100% identity) | M.EcoS0938ORF4300P | |
| 4305 | R | Ecost88ORF24685P (100% identity) | EcoS0938ORF4300P | |
| 4310 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18155 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 18160 | R | EcosS9McrCP (100% identity) | EcoS0938McrCP | |
| 18165 | R | EcosS3McrBP (100% identity) | EcoS0938McrBP | |
| 18170 | glycosyltransferase | |||