Escherichia coli AVS0467 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli AVS0467 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,084,908 bp | CP124357 |
| plasmid pAVS0467-A: | 138,192 bp | CP124358 |
REBASE acronym: EcoS0467
Org_num: 67294
All begin QJP58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18605 | type IV toxin-antitoxin system AbiEi family | |||
| 18610 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0467ORF18615P |
| 18615 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0467ORF18615P |
| 18620 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0467ORF18615P |
| 18625 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0467DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 family protein | |||
| 2330 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0467ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 10190 | phosphohydrolase | |||
| 10195 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoS0467DcmP |
| 10200 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0467DcmP |
| 10205 | drug/metabolite exporter YedA | |||
| 14385 | DUF3927 family protein | |||
| 14400 | M | M.Ecos131ORF2315P (100% identity) | A | M.EcoS0467ORF14400P |
| 14405 | TrmB family transcriptional regulator | |||
| 20545 | McrC family protein | |||
| 20550 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0467ORF20555P |
| 20555 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0467ORF20555P |
| 20560 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0467ORF20555P |
| 20565 | helix-turn-helix domain-containing protein | |||
| 20830 | 174 aa hypothetical protein | |||
| 20835 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoS0467ORF20835P |
| 20840 | ATP-binding protein | |||
| 20845 | response regulator receiver domain | |||
| 20850 | R | Ecos19ORF20635P (100% identity) | EcoS0467ORF20850P | |
| 20855 | 97 aa hypothetical protein | |||
| plasmid pAVS0467-A | ||||
| 25345 | 73 aa hypothetical protein | |||
| 25350 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoS0467ORF25350P |
| 25355 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9980 | shufflon system plasmid conjugative transfer | |||
| 9985 | R | Ecost88ORF24685P (100% identity) | EcoS0467ORF9990P | |
| 9990 | M | M.EcosS2ORF3675P (100% identity) | M.EcoS0467ORF9990P | |
| 9995 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20535 | glycosyltransferase | |||
| 20540 | R | EcosS3McrBP (100% identity) | EcoS0467McrBP | |
| 20545 | R | EcosS9McrCP (100% identity) | EcoS0467McrCP | |
| 20550 | Alw26I/Eco31I/Esp3I family type II restriction | |||