Escherichia coli AVS0226 |
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Putative Escherichia coli AVS0226 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,284,087 bp | CP124353 |
| plasmid pAVS0226-A: | 108,889 bp | CP124354 |
REBASE acronym: EcoS0226
Org_num: 67283
All begin QJP71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18505 | endoribonuclease SymE | |||
| 18510 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0226ORF18520P |
| 18515 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0226ORF18520P |
| 18520 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0226ORF18520P |
| 18525 | restriction endonuclease | |||
| 20330 | ash family protein | |||
| 20335 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0226ORF20340P |
| 20340 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0226ORF20340P |
| 20345 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0226ORF20340P |
| 20350 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2920 | TrmB family transcriptional regulator | |||
| 2925 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS0226ORF2935P |
| 2930 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS0226ORF2935P |
| 2935 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoS0226ORF2935P |
| 2940 | antiterminator Q family protein | |||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0226DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0226DcmP |
| 3825 | phosphohydrolase | |||
| 7845 | 121 aa hypothetical protein | |||
| 7850 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoS0226ORF7855P |
| 7855 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS0226ORF7855P |
| 7860 | 257 aa hypothetical protein | |||
| 7985 | phage lysis protein EssD | |||
| 7990 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS0226ORF7990P | |
| 7995 | 95 aa hypothetical protein | |||
| 8030 | LexA family transcriptional regulator | |||
| 8035 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS0226ORF8035P |
| 8040 | PerC family transcriptional regulator | |||
| 11820 | DNA-binding transcriptional regulator Fis | |||
| 11825 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0226ORF11825P |
| 11830 | DUF2556 family protein | |||
| 12420 | ribulose-phosphate 3-epimerase | |||
| 12425 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0226DamP |
| 12430 | cell division protein DamX | |||
| 16865 | conjugal transfer protein TraG N-terminal | |||
| 16870 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS0226ORF16870P | |
| 16875 | R | EcosS3ORF15775P (100% identity) | EcoS0226ORF16870P | |
| 16880 | response regulator receiver domain | |||
| 18155 | helix-turn-helix domain-containing protein | |||
| 18160 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0226ORF18160P |
| 18165 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0226ORF18160P |
| 18170 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0226ORF18160P |
| 18175 | McrC family protein | |||
| 23810 | 71 aa hypothetical protein | |||
| 23815 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0226ORF23815P | |
| 23820 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0226-A | ||||
| 26730 | 73 aa hypothetical protein | |||
| 26735 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS0226ORF26735P | |
| 26740 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18170 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 18175 | R | EcosS9McrCP (100% identity) | EcoS0226McrCP | |
| 18180 | R | EcosS3McrBP (100% identity) | EcoS0226McrBP | |
| 18185 | glycosyltransferase | |||
| 18520 | class I SAM-dependent DNA methyltransferase | |||
| 18525 | R | Ecou021MrrP (100% identity) | EcoS0226MrrP | |
| 18530 | BrnT family toxin | |||