Escherichia coli AVS0193 |
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Putative Escherichia coli AVS0193 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,163,545 bp | CP124455 |
| plasmid pAVS0193-A: | 146,449 bp | CP124456 |
REBASE acronym: EcoS0193
Org_num: 67279
All begin QJP76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2860 | endoribonuclease SymE | |||
| 2865 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0193ORF2875P |
| 2870 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0193ORF2875P |
| 2875 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0193ORF2875P |
| 2880 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2505 | helix-turn-helix domain-containing protein | |||
| 2510 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0193ORF2510P |
| 2515 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0193ORF2510P |
| 2520 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0193ORF2510P |
| 2525 | McrC family protein | |||
| 4670 | tyrosine-type recombinase/integrase | |||
| 4675 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.EcoS0193ORF4675P |
| 4680 | zinc ribbon domain-containing protein | |||
| 8400 | 71 aa hypothetical protein | |||
| 8405 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0193ORF8405P | |
| 8410 | helix-turn-helix transcriptional regulator | |||
| 10655 | TrmB family transcriptional regulator | |||
| 10660 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS0193ORF10660P |
| 10675 | DUF3927 family protein | |||
| 14230 | drug/metabolite exporter YedA | |||
| 14235 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0193DcmP |
| 14240 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0193DcmP |
| 14245 | phosphohydrolase | |||
| 21645 | DNA-binding transcriptional regulator Fis | |||
| 21650 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0193ORF21650P |
| 21655 | DUF2556 family protein | |||
| plasmid pAVS0193-A | ||||
| 25670 | 103 aa hypothetical protein | |||
| 25675 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0193ORF25675P |
| 25680 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2520 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2525 | R | EcosS9McrCP (100% identity) | EcoS0193McrCP | |
| 2530 | R | EcosS3McrBP (100% identity) | EcoS0193McrBP | |
| 2535 | glycosyltransferase | |||
| 2875 | class I SAM-dependent DNA methyltransferase | |||
| 2880 | R | Ecou021MrrP (100% identity) | EcoS0193MrrP | |
| 2885 | BrnT family toxin | |||