Escherichia coli AVS0042 |
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Putative Escherichia coli AVS0042 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
Complete sequence: 5,043,712 bp
GenBank #: CP124448
REBASE acronym: Eco0042
Org_num: 67271
All begin QJP87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 17055 | endoribonuclease SymE | |||
| 17060 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco0042ORF17070P |
| 17065 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco0042ORF17070P |
| 17070 | M | M.EcoREF2ORF16940P (100% identity) | RTACNNNNGTG | M.Eco0042ORF17070P |
| 17075 | restriction endonuclease | |||
| 18880 | ash family protein | |||
| 18885 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco0042ORF18890P |
| 18890 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco0042ORF18890P |
| 18895 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco0042ORF18890P |
| 18900 | type IV toxin-antitoxin system AbiEi family | |||
| 20210 | IS1-like element IS1A family transposase | |||
| 20215 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Eco0042ORF20225P |
| 20220 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S1.Eco0042ORF20225P |
| 20225 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Eco0042ORF20225P |
| 20230 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3680 | drug/metabolite exporter YedA | |||
| 3685 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco0042DcmP |
| 3690 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco0042DcmP |
| 3695 | phosphohydrolase | |||
| 10855 | DNA-binding transcriptional regulator Fis | |||
| 10860 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco0042ORF10860P |
| 10865 | DUF2556 family protein | |||
| 11465 | ribulose-phosphate 3-epimerase | |||
| 11470 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco0042DamP |
| 11475 | cell division protein DamX | |||
| 16700 | helix-turn-helix domain-containing protein | |||
| 16705 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco0042ORF16705P |
| 16710 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco0042ORF16705P |
| 16715 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco0042ORF16705P |
| 16720 | McrC family protein | |||
| 20150 | 73 aa hypothetical protein | |||
| 20155 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco0042ORF20155P |
| 20160 | 103 aa hypothetical protein | |||
| 22320 | 71 aa hypothetical protein | |||
| 22325 | M | M.KpnYN1ORFGP (89% identity) | M.Eco0042ORF22325P | |
| 22330 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16715 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16720 | R | EcosS9McrCP (100% identity) | Eco0042McrCP | |
| 16725 | R | EcosS3McrBP (100% identity) | Eco0042McrBP | |
| 16730 | glycosyltransferase | |||
| 17070 | class I SAM-dependent DNA methyltransferase | |||
| 17075 | R | Ecou021MrrP (100% identity) | Eco0042MrrP | |
| 17080 | BrnT family toxin | |||