Escherichia coli AVS0528 |
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Putative Escherichia coli AVS0528 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,984,915 bp | CP124400 |
| plasmid pAVS0528-A: | 97,703 bp | CP124401 |
REBASE acronym: EcoS0528
Org_num: 67296
All begin QJP80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14965 | helix-turn-helix domain-containing protein | |||
| 14970 | M | M.Pre393ORF2750P (100% identity) | M.EcoS0528ORF14970P | |
| 14975 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoS0528ORF14970P | |
| 14980 | RecQ family ATP-dependent DNA helicase | |||
| 14985 | DNA-processing protein DprA | |||
| 14990 | R | EcotcmA3ORF16550P (100% identity) | EcoS0528ORF14970P | |
| 14995 | IS3 family transposase | |||
| 16765 | endoribonuclease SymE | |||
| 16770 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0528ORF16780P |
| 16775 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0528ORF16780P |
| 16780 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0528ORF16780P |
| 16785 | restriction endonuclease | |||
| 18585 | ash family protein | |||
| 18590 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0528ORF18595P |
| 18595 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0528ORF18595P |
| 18600 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0528ORF18595P |
| 18605 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0528-A | ||||
| 24680 | IS1-like element IS1A family transposase | |||
| 24685 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoS0528ORF24695P |
| 24690 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.EcoS0528ORF24695P |
| 24695 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoS0528ORF24695P |
| 24700 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3480 | drug/metabolite exporter YedA | |||
| 3485 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0528DcmP |
| 3490 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0528DcmP |
| 3495 | phosphohydrolase | |||
| 10625 | DNA-binding transcriptional regulator Fis | |||
| 10630 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0528ORF10630P |
| 10635 | DUF2556 family protein | |||
| 11235 | ribulose-phosphate 3-epimerase | |||
| 11240 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0528DamP |
| 11245 | cell division protein DamX | |||
| 16525 | helix-turn-helix domain-containing protein | |||
| 16530 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0528ORF16530P |
| 16535 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0528ORF16530P |
| 16540 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0528ORF16530P |
| 16545 | McrC family protein | |||
| 21840 | 71 aa hypothetical protein | |||
| 21845 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0528ORF21845P | |
| 21850 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0528-A | ||||
| 24620 | 73 aa hypothetical protein | |||
| 24625 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0528ORF24625P |
| 24630 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16540 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16545 | R | EcosS9McrCP (100% identity) | EcoS0528McrCP | |
| 16550 | R | EcosS3McrBP (100% identity) | EcoS0528McrBP | |
| 16555 | glycosyltransferase | |||
| 16780 | class I SAM-dependent DNA methyltransferase | |||
| 16785 | R | Ecou021MrrP (100% identity) | EcoS0528MrrP | |
| 16790 | BrnT family toxin | |||