Escherichia coli RHB13-SO-C03 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB13-SO-C03 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 4,859,593 bp | CP099225 |
| plasmid unnamed2: | 95,826 bp | CP099227 |
| plasmid unnamed3: | 91,303 bp | CP099228 |
REBASE acronym: Eco13SOC03
Org_num: 66452
All begin NFJ75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10820 | NADPH-dependent aldehyde reductase Ahr | |||
| 10830 | R | EcoP231ORF1540P (100% identity) | RTCANNNNNNCTC | Eco13SOC03ORF10840P |
| 10835 | S | S.EcoSCU103ORF3030P (100% identity) | RTCANNNNNNCTC | S.Eco13SOC03ORF10840P |
| 10840 | M | M.Eco13SOC02ORF10840P (100% identity) | RTCANNNNNNCTC | M.Eco13SOC03ORF10840P |
| 10845 | restriction endonuclease subunit M | |||
| 18525 | IS5-like element ISKpn26 family transposase | |||
| 18530 | R | Eco13SOC02ORF18540P (100% identity) | Eco13SOC03ORF18540P | |
| 18535 | S | S.SflN97ORF14060P (100% identity) | S.Eco13SOC03ORF18540P | |
| 18540 | M | M.SflN97ORF14060P (100% identity) | M.Eco13SOC03ORF18540P | |
| 18545 | GTPase family protein | |||
| plasmid unnamed2 | ||||
| 24530 | type II toxin-antitoxin system Phd/YefM family | |||
| 24535 | M | M.EcoS321ORF25465P (100% identity) | M.Eco13SOC03ORF24535P | |
| 24540 | S | S.EcoMB50ORF22700P (66% identity) | S.Eco13SOC03ORF24535P | |
| 24545 | R | EcoS321ORF25465P (100% identity) | Eco13SOC03ORF24535P | |
| 24550 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 735 | phosphohydrolase | |||
| 740 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco13SOC03DcmP |
| 745 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco13SOC03DcmP |
| 750 | drug/metabolite exporter YedA | |||
| 5570 | phage lysis protein EssD | |||
| 5575 | M | M.Sso63633ORF22290P (100% identity) | M.Eco13SOC03ORF5575P | |
| 5580 | 67 aa hypothetical protein | |||
| 5610 | LexA family transcriptional regulator | |||
| 5615 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Eco13SOC03ORF5615P |
| 5620 | PerC family transcriptional regulator | |||
| 8785 | NinE family protein | |||
| 8790 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco13SOC03ORF8790P |
| 8795 | recombination protein NinB | |||
| 8890 | DUF1317 domain-containing protein | |||
| 8895 | M | M.Sbo812ORFAP (100% identity) | GATC | M.Eco13SOC03ORF8895P |
| 8900 | cell division protein ZapA | |||
| 10860 | McrC family protein | |||
| 10865 | R | EcoWCTORF19980P (100% identity) | Eco13SOC03ORF10865P | |
| 10870 | HNH endonuclease | |||
| 17390 | DUF2556 family protein | |||
| 17395 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco13SOC03ORF17395P |
| 17400 | DNA-binding transcriptional regulator Fis | |||
| plasmid unnamed2 | ||||
| 24640 | SPFH domain-containing protein | |||
| 24655 | M | M.Sen9860ORF25540P (100% identity) | M.Eco13SOC03ORF24655P | |
| 24660 | recombination-associated protein RdgC | |||
| plasmid unnamed3 | ||||
| 24800 | 103 aa hypothetical protein | |||
| 24805 | M | M.Sso8ORF23800P (100% identity) | SAY | M.Eco13SOC03ORF24805P |
| 24810 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10850 | IS3-like element IS3 family transposase | |||
| 10855 | R | SflSTLE4McrBP (100% identity) | Eco13SOC03McrBP | |
| 10860 | R | EcoZ151McrCP (100% identity) | Eco13SOC03McrCP | |
| 10865 | HNH endonuclease | |||