Escherichia coli RHB35-SO-C06 |
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Putative Escherichia coli RHB35-SO-C06 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 5,103,346 bp | CP099114 |
| plasmid unnamed1: | 117,401 bp | CP099115 |
| plasmid unnamed2: | 82,250 bp | CP099116 |
REBASE acronym: Eco35SOC06
Org_num: 66490
All begin NFK56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4510 | IS66 family transposase | |||
| 4515 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Eco35SOC06ORF4520P |
| 4520 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Eco35SOC06ORF4520P |
| 4525 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Eco35SOC06ORF4520P |
| 4530 | transposase domain-containing protein | |||
| 20705 | DUF262 domain-containing HNH endonuclease family | |||
| 20710 | R | Eco6C06ORF21835P (100% identity) | CACNNNNNNNGTTG | Eco35SOC06ORF20715P |
| 20715 | M | M.SspS13ORF3945P (100% identity) | CACNNNNNNNGTTG | M.Eco35SOC06ORF20715P |
| 20720 | S | S.Ecoi362ORF3832P (100% identity) | CACNNNNNNNGTTG | S.Eco35SOC06ORF20715P |
| 20725 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1925 | cell division protein DamX | |||
| 1930 | M | M.Fnu048ORFTP (100% identity) | GATC | M.Eco35SOC06DamP |
| 1935 | ribulose-phosphate 3-epimerase | |||
| 2455 | DUF2556 family protein | |||
| 2460 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco35SOC06ORF2460P |
| 2465 | DNA-binding transcriptional regulator Fis | |||
| 20920 | HNH endonuclease | |||
| 20925 | R | Ecoi362ORF3874P (100% identity) | Eco35SOC06ORF20925P | |
| 20930 | peptidase | |||
| plasmid unnamed1 | ||||
| 24485 | 103 aa hypothetical protein | |||
| 24490 | M | M.SflN101ORF24625P (100% identity) | M.Eco35SOC06ORF24490P | |
| 24495 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25280 | 73 aa hypothetical protein | |||
| 25285 | M | M.Kpn1026ORFJP (100% identity) | M.Eco35SOC06ORF25285P | |
| 25290 | 101 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21615 | IS110 family transposase | |||
| 21620 | R | CspJZ38ORFAP (95% identity) | Eco35SOC06ORF21625P | |
| 21625 | M | M.Kox147ORF7420P (93% identity) | M.Eco35SOC06ORF21625P | |
| 21630 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20725 | endoribonuclease SymE | |||
| 20730 | R | EcoVCSW5GmrSDP (54% identity) | Eco35SOC06GmrSDP | |
| 20735 | R | SflLIN8GmrSDP (42% identity) | Eco35SOC06GmrSP | |
| 20740 | 15 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15810 | replication endonuclease | |||
| 15815 | M | M.EcoR47ORF14200P (100% identity) | GATC | M.Eco35SOC06ORF15815P |
| 15820 | TraR/DksA family transcriptional regulator | |||