Escherichia coli RHB43-SE-C04 |
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Putative Escherichia coli RHB43-SE-C04 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 4,933,111 bp | CP099072 |
| plasmid unnamed1: | 124,283 bp | CP099073 |
| plasmid unnamed2: | 107,495 bp | CP099074 |
REBASE acronym: Eco43SEC04
Org_num: 66502
All begin NFK83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20565 | restriction endonuclease | |||
| 20570 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.Eco43SEC04ORF20570P |
| 20575 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.Eco43SEC04ORF20570P |
| 20580 | R | SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | Eco43SEC04ORF20570P |
| 20585 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1880 | cell division protein DamX | |||
| 1885 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco43SEC04DamP |
| 1890 | ribulose-phosphate 3-epimerase | |||
| 2505 | DUF2556 family protein | |||
| 2510 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco43SEC04ORF2510P |
| 2515 | DNA-binding transcriptional regulator Fis | |||
| 9230 | TrmB family transcriptional regulator | |||
| 9235 | M | M.EcoFu019ORF10110P (100% identity) | M.Eco43SEC04ORF9235P | |
| 9250 | phage holin family protein | |||
| 9440 | phosphohydrolase | |||
| 9445 | M | M.Spn7978DcmP (100% identity) | CCWGG | M.Eco43SEC04DcmP |
| 9450 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco43SEC04DcmP |
| 9455 | drug/metabolite exporter YedA | |||
| 11630 | DUF977 family protein | |||
| 11635 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco43SEC04ORF11635P | |
| 11640 | 139 aa hypothetical protein | |||
| 13715 | tellurite/colicin resistance protein | |||
| 13730 | M | M.EcoP19ORFHP (100% identity) | M.Eco43SEC04ORF13730P | |
| 13735 | TrmB family transcriptional regulator | |||
| 16385 | NinE family protein | |||
| 16390 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco43SEC04ORF16390P |
| 16395 | recombination protein NinB | |||
| plasmid unnamed1 | ||||
| 24255 | 73 aa hypothetical protein | |||
| 24260 | M | M.Sen527ORF25750P (100% identity) | M.Eco43SEC04ORF24260P | |
| 24265 | 101 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25015 | 103 aa hypothetical protein | |||
| 25020 | M | M.StyR64ORFAP (100% identity) | M.Eco43SEC04ORF25020P | |
| 25025 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 345 | zinc-ribbon domain-containing protein | |||
| 350 | R | Kpn0718McrBP (100% identity) | Eco43SEC04McrBP | |
| 355 | R | SflN97McrCP (100% identity) | Eco43SEC04McrCP | |
| 360 | transposase | |||
| 20560 | BrnT family toxin | |||
| 20565 | R | SflSTLE3MrrP (100% identity) | Eco43SEC04MrrP | |
| 20570 | type I restriction-modification system subunit | |||