Escherichia coli RHB20-E4-C04 |
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Putative Escherichia coli RHB20-E4-C04 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 4,937,991 bp | CP099192 |
| plasmid unnamed1: | 217,251 bp | CP099193 |
| plasmid unnamed2: | 106,559 bp | CP099194 |
REBASE acronym: Eco20E4C04
Org_num: 66463
All begin NFK03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3550 | integrase arm-type DNA-binding domain-containing | |||
| 3555 | M | M.Eco20C17ORF3505P (100% identity) | M.Eco20E4C04ORF3555P | |
| 3560 | AAA family ATPase | |||
| 3565 | S | S.SflFF87ORF3230P (100% identity) | S.Eco20E4C04ORF3555P | |
| 3570 | R | SflFF87ORF3230P (100% identity) | Eco20E4C04ORF3555P | |
| 3575 | 72 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1655 | cell division protein DamX | |||
| 1660 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco20E4C04DamP |
| 1665 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco20E4C04ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 5895 | PerC family transcriptional regulator | |||
| 5900 | M | M.Efe41C20ORF1660P (100% identity) | GATC | M.Eco20E4C04ORF5900P |
| 5905 | LexA family transcriptional regulator | |||
| 6100 | 257 aa hypothetical protein | |||
| 6105 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco20E4C04ORF6105P |
| 6110 | R | Sso8033ORF3755P (100% identity) | CCWGG | Eco20E4C04ORF6105P |
| 6115 | 121 aa hypothetical protein | |||
| 13985 | phage holin, lambda family | |||
| 13990 | M | M.SflFF34ORF18205P (100% identity) | M.Eco20E4C04ORF13990P | |
| 13995 | TrmB family transcriptional regulator | |||
| 16005 | 70 aa hypothetical protein | |||
| 16010 | M | M.Eco300709ORFBP (100% identity) | M.Eco20E4C04ORF16010P | |
| 16015 | DUF2732 domain-containing protein | |||
| plasmid unnamed1 | ||||
| 24695 | 55 aa hypothetical protein | |||
| 24700 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco20E4C04ORF24700P |
| 24705 | thermonuclease family protein | |||
| 25045 | 48 aa hypothetical protein | |||
| 25050 | M | M.YpsF1ORFBP (100% identity) | M.Eco20E4C04ORF25050P | |
| 25055 | 202 aa hypothetical protein | |||
| 25175 | DNA-binding protein | |||
| 25180 | M | M.YpsF1ORFDP (95% identity) | M.Eco20E4C04ORF25180P | |
| 25185 | 284 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25625 | 73 aa hypothetical protein | |||
| 25630 | M | M.SflN92ORF24820P (100% identity) | M.Eco20E4C04ORF25630P | |
| 25635 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13820 | isocitrate/isopropylmalate family dehydrogenase | |||
| 13825 | R | EcoMB19ORF20745P (100% identity) | YCGR | Eco20E4C04ORF13825P |
| 13830 | site-specific DNA recombinase | |||