Escherichia coli NC22 |
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Putative Escherichia coli NC22 RM systems
Ref: Tan,M. unpublished
REBASE ref # 36541
| Sequence length: | GenBank #: | |
| Chromosome: | 4,886,732 bp | CP109953 |
| plasmid p2: | 234,214 bp | CP109955 |
| plasmid p3: | 255,823 bp | CP109956 |
REBASE acronym: EcoNC22
Org_num: 66429
All begin OI124_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21720 | transposase | |||
| 21725 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoNC22ORF21730P |
| 21730 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoNC22ORF21730P |
| 21735 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoNC22ORF21730P |
| 21740 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2155 | transcriptional regulator | |||
| 2160 | M | M.EcoVEV10FORF15720P (100% identity) | M.EcoNC22ORF2160P | |
| 2165 | 89 aa hypothetical protein | |||
| 3610 | phosphohydrolase | |||
| 3615 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoNC22DcmP |
| 3620 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoNC22DcmP |
| 3625 | drug/metabolite exporter YedA | |||
| 9175 | 273 aa hypothetical protein | |||
| 9180 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.EcoNC22ORF9180P |
| 9185 | TraR/DksA family transcriptional regulator | |||
| 10910 | 67 aa hypothetical protein | |||
| 10915 | M | M.EcoNC19ORF16685P (100% identity) | M.EcoNC22ORF10915P | |
| 10920 | 63 aa hypothetical protein | |||
| 14080 | McrC family protein | |||
| 14085 | R | EcoNC19ORF20015P (100% identity) | GGTCTC | EcoNC22ORF14090P |
| 14090 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoNC22ORF14090P |
| 14095 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoNC22ORF14090P |
| 14100 | IS21-like element ISEc12 family helper ATPase | |||
| 19155 | cell division protein DamX | |||
| 19160 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoNC22DamP |
| 19165 | ribulose-phosphate 3-epimerase | |||
| 19780 | DUF2556 family protein | |||
| 19785 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoNC22ORF19785P |
| 19790 | DNA-binding transcriptional regulator Fis | |||
| plasmid p2 | ||||
| 23855 | DNA-binding protein | |||
| 23860 | M | M.YpsF1ORFDP (95% identity) | M.EcoNC22ORF23860P | |
| 23865 | 277 aa hypothetical protein | |||
| 24365 | 55 aa hypothetical protein | |||
| 24370 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoNC22ORF24370P |
| 24375 | thermonuclease family protein | |||
| 24960 | 48 aa hypothetical protein | |||
| 24965 | M | M.YpsF1ORFBP (100% identity) | M.EcoNC22ORF24965P | |
| 24970 | 202 aa hypothetical protein | |||
| plasmid p3 | ||||
| 25555 | 103 aa hypothetical protein | |||
| 25560 | M | M.StyR64ORFAP (100% identity) | M.EcoNC22ORF25560P | |
| 25565 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2230 | recombinase family protein | |||
| 2235 | R | Ecochi7122GmrSDP (100% identity) | EcoNC22GmrSDP | |
| 2240 | IS3-like element IS2 family transposase | |||
| 14070 | glycosyltransferase | |||
| 14075 | R | EcosS3McrBP (100% identity) | EcoNC22McrBP | |
| 14080 | R | EcosS9McrCP (100% identity) | EcoNC22McrCP | |
| 14085 | Alw26I/Eco31I/Esp3I family type II restriction | |||