Edwardsiella ictaluri S00-1912 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Edwardsiella ictaluri S00-1912 RM systems
Ref: Rose,D. et al. unpublished
REBASE ref # 36534
Complete sequence: 3,835,275 bp
GenBank #: CP092062
REBASE acronym: Eic1912
Org_num: 66391
All begin MAY76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3305 | 401 aa hypothetical protein | |||
| 3310 | R | EicORF1012P (99% identity) | GTCANNNNNNTGC | Eic1912ORF3320P |
| 3315 | S | S.EicORF1012P (100% identity) | GTCANNNNNNTGC | S.Eic1912ORF3320P |
| 3320 | M | M.EicORF1012P (100% identity) | GTCANNNNNNTGC | M.Eic1912ORF3320P |
| 3325 | oligogalacturonate-specific porin KdgM family | |||
| 5565 | G/U mismatch-specific DNA glycosylase | |||
| 5575 | R | EicORF518P (100% identity) | GGANNNNNNNVTATC | Eic1912ORF5585P |
| 5580 | S | S.EicYCHORF2565P (100% identity) | GGANNNNNNNVTATC | S.Eic1912ORF5585P |
| 5585 | M | M.EicYCHORF2565P (100% identity) | GGANNNNNNNVTATC | M.Eic1912ORF5585P |
| 5590 | 135 aa hypothetical protein | |||
| 7785 | 194 aa hypothetical protein | |||
| 7790 | R | Eic773ORF155P (100% identity) | Eic1912ORF7795P | |
| 7795 | M | M.EicORF44P (100% identity) | M.Eic1912ORF7795P | |
| 7800 | S | S.EicORF44P (100% identity) | S.Eic1912ORF7795P | |
| 7805 | IS256-like element ISEic2 family transposase | |||
| 10305 | transcription factor | |||
| 10310 | M | M.EicORF3444P (100% identity) | RAACNNNNNGTC | M.Eic1912ORF10310P |
| 10315 | S | S.Eic773ORF15825P (100% identity) | RAACNNNNNGTC | S.Eic1912ORF10310P |
| 10320 | DUF4433 domain-containing protein | |||
| 10325 | macro domain-containing protein | |||
| 10330 | R | EicORF3444P (100% identity) | RAACNNNNNGTC | Eic1912ORF10310P |
| 10335 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1110 | transposase | |||
| 1115 | V | V.EicYCHORF6960P (100% identity) | V.Eic1912ORF1120P | |
| 1120 | M | M.EicYCHORF6960P (100% identity) | CCWGG | M.Eic1912ORF1120P |
| 1125 | R | EicYCHORF6960P (100% identity) | CCWGG | Eic1912ORF1120P |
| 1130 | 215 aa hypothetical protein | |||
| 9445 | SPOR domain-containing protein | |||
| 9450 | M | M.EicYCHDamP (100% identity) | GATC | M.Eic1912DamP |
| 9455 | ribulose-phosphate 3-epimerase | |||
| 11720 | AlpA family transcriptional regulator | |||
| 11725 | M | M.EicORF3149P (100% identity) | TGGCCA | M.Eic1912ORF11725P |
| 11730 | 123 aa hypothetical protein | |||
| 11795 | phage tail sheath protein | |||
| 11800 | M | M.EicORF3136P (100% identity) | M.Eic1912ORF11800P | |
| 11805 | 57 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3290 | 154 aa hypothetical protein | |||
| 3295 | R | Eic773McrCP (100% identity) | Eic1912McrCP | |
| 3300 | R | EicMcrBP (58% identity) | Eic1912McrBBP | |
| 3305 | R | Eic773McrBP (44% identity) | Eic1912McrBAP | |
| 3310 | HsdR family type I site-specific | |||