Escherichia coli E89 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli E89 RM systems
Ref: Zhu,Q. et al. unpublished
REBASE ref # 36398
| Sequence length: | GenBank #: | |
| Chromosome: | 4,776,546 bp | CP121157 |
| plasmid pE89-1: | 159,910 bp | CP121158 |
REBASE acronym: EcoE89
Org_num: 66419
All begin P6H86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13400 | SprT family zinc-dependent metalloprotease | |||
| 13405 | R | Eco210AORFBP (99% identity) | EcoE89ORF13420P | |
| 13410 | YecA family protein | |||
| 13415 | S | S.Eco210AORFBP (100% identity) | S1.EcoE89ORF13420P | |
| 13420 | M | M.EcoAWORFDP (100% identity) | M.EcoE89ORF13420P | |
| 13425 | 388 aa hypothetical protein | |||
| 20170 | IS3-like element IS3 family transposase | |||
| 20175 | S | S.EcoC1730ORF22140P (100% identity) | S.EcoE89ORF20175P | |
| 20180 | R | EcoYPE3ORF20380P (100% identity) | EcoE89ORF20175P | |
| 20190 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1955 | cell division protein DamX | |||
| 1960 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoE89DamP |
| 1965 | ribulose-phosphate 3-epimerase | |||
| 2595 | DUF2556 family protein | |||
| 2600 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoE89ORF2600P |
| 2605 | DNA-binding transcriptional regulator Fis | |||
| 7420 | 141 aa hypothetical protein | |||
| 7425 | M | M.EcoE89ORF14145P (100% identity) | GATC | M.EcoE89ORF7425P |
| 7430 | NinE family protein | |||
| 13685 | drug/metabolite exporter YedA | |||
| 13690 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoE89DcmP |
| 13695 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoE89DcmP |
| 13700 | phosphohydrolase | |||
| 14140 | NinE family protein | |||
| 14145 | M | M.EcoE89ORF7425P (100% identity) | GATC | M.EcoE89ORF14145P |
| 14150 | 141 aa hypothetical protein | |||
| 17625 | 121 aa hypothetical protein | |||
| 17630 | R | EcoYPE3ORF18250P (100% identity) | CCWGG | EcoE89ORF17635P |
| 17635 | M | M.EcoBR29ORF15400P (99% identity) | M.EcoE89ORF17635P | |
| 17640 | 257 aa hypothetical protein | |||
| 18130 | phage holin, lambda family | |||
| 18135 | M | M.EcoSTEC413ORF8565P (100% identity) | M.EcoE89ORF18135P | |
| 18140 | TrmB family transcriptional regulator | |||
| 21615 | phage lysis protein EssD | |||
| 21620 | M | M.Sso63633ORF22290P (100% identity) | M.EcoE89ORF21620P | |
| 21625 | TrmB family transcriptional regulator | |||
| 21625 | TrmB family transcriptional regulator | |||
| 21630 | R | EcoS0247ORF16915AP (100% identity) | GTCGAC | R1.EcoE89ORF21640P |
| 21635 | R | EcoS0247ORF16915BP (100% identity) | GTCGAC | R2.EcoE89ORF21640P |
| 21640 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.EcoE89ORF21640P |
| 21645 | antiterminator Q family protein | |||
| plasmid pE89-1 | ||||
| 23595 | IS6-like element IS26 family transposase | |||
| 23600 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoE89ORF23605P |
| 23605 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.EcoE89ORF23605P |
| 23610 | IS1 family transposase | |||
| 23795 | 73 aa hypothetical protein | |||
| 23800 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoE89ORF23800P |
| 23805 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20155 | HNH endonuclease | |||
| 20160 | R | EcoYPE3McrCP (100% identity) | EcoE89McrCP | |
| 20165 | R | SflSTLE4McrBP (17% identity) | EcoE89McrBP | |
| 20170 | IS3-like element IS3 family transposase | |||